Gene detail

Detailed information of ENSOFVP00000030257.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: CAH3162129.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

ENSOFVT00000032670

GTATTGCGAGAGGAAAGCCATGTCAATTTTGGATTGTTCTCCCCAGAGCAAATGCATCAATATGCACACATTCACTGTGTCAGCAAGAATCTGTATAATCAGGACCATGCCCGTACCCCTGTCCCATATGGGGTGTTGGATTCACATATGGGAACAAGTAGTAAAGACCGAAACTGCGAAACCTGCGGCAAAGCTCTGGCTGATTGTGTTGGTCACTATGGATACCTGGATCTTGAACTTCCGATCTTCCATGTTGGCTTTTTTAGATCAACCATAGTCATTCTTCAAACGATATGTAAAACATGTTCCAGAGTACTGTTACCTCCTCAAGAAAAGAAGCATTTTCTGGACCAGTTAAGCCGACCAGCAGTGTCTGCCTTGACGAAGAAGGGCTTGAAAAAAAAGATTGTTGAAAAGTGTAAAAAGATTTCTCACTGCCCATACTGTGAAGCATTAAACGGTTTTGTAAGAAAGAGCGGAATGATGAAGATTGTTCATGAAAAGTACAAATCAGCCAGGAAGTATGTTGATCCTGTCATCTCTGAATTCCAAGCATCATTTGGCTCAGCAATCGAATACAATAAAGAACTGGATACCTTACTCAACAAGGCTCAGGAAGTGTTAAATCCACTAAGAGTCATCACATTGTTTGAGCAAATTCCAGATCAGGATTGTCCTTTATTAATGATGAAACCTGAGCTAGGCAGACCAGAGAATCTTATTGTGACACGCCTACTTGTTCCGCCAGTTTGCATCAGGCCATCAGTCATTAGCGATCTCCAGAGTGGAAGTAATGAAGATGACCTGACGATGAAGCTGACAGAAATCATTTTCCTCAATGATGTTATCAGTAAACACAGAGCAACTGGAGCGAAAATACAAATGATCATGGAAGACTGGGATTTCCTTCAGCTTCAATGTGCATTATATATTAACAGTGAAATGTCAGGAATTCCCCTAAGTATGCAGCCCAAAAAAGGATCGCGAGGATTTGTACAAAGACTGAAGGGAAAGCAGGGTCGCTTTAGAGGGAACCTGTCTGGTAAAAGAGTTGACTATTCTGGACGCACGGTCATTTCTCCTGACCCTAATCTCCATATTGATCAGGTGGCAGTTcctgtacatgtagctaaggTTCTCACATATCCTGAAAGGGTTACAGAAGCTAACATGAAGTTAATGAAACAGTTGATATTGAATGGAGCTGACAAACATCCGGGAGCTAACTTTATTCAACAGAGACAAACCAGCATCAAAAAGTTCCTAAAGTATGGTAATAGAAAACAGATCAGCAAAGAATTGAAGTATGGTGATATCGTGGAGAGGCACCTGATGGATGGAGATGTTGTACTGTTCAACCGACAACCTTCACTACACAAACTAAGCATCATGGCTCACCAGGCTGTTGTGCGGCCTCATCGGACATTCCGCTTCAATGAGTGCGTTTGCACCCCTTACAATGCAGACTTTGACGGCGATGAAATGAACCTCCACCTACCACAAACAGAGGAAGCCAAGGCTGAAGCTCTTACACTTATGGGTGTAAAATCTAATTTGGTGACACCAAGAAATGGCGAACCTCTTATAGCTGCTATTCAAGACTTCATCACAGGAGCTTATCTTCTCACGCAGAAAGATGTTTTCCTTGACCGGAGTCATATCACCCAGCTATTAGCTTACATCCTGGCTGGGAAGGATGTAAATATCAGAATTGATCTGCCACCCCCGGTCATTGTAAAGCCTGTAAAATTATGGACTGGAAAGCAAGTCTTTAATGTTGTGCTACGACCAAACAAGGACATGCCAATCAAGATGAATTTACGAACAAAAGGCAAACAGTACACAAGTGGAGAAGATCTTTGTGTGAAAGACTCTTATGTGGTGATTCATAACAGTGAACTGATGTGTGGAGCATTGGACAAAGCAGTGCTAGGATCTGGCTCCAAGAACAGTATCTTCTATGTTCTTCTTAGAGACTTTGGTGGTCAGGCTGCTGCAGATGCCATGTGGAGAGTAGCAAGAGTGTGTCCATTTTTCCTGAGTAATAGAGGATTCTCCATCGGCATCGGTGACGTCACGCCTGGGCAAGGTCTTCTGAAAGCGAAGGACGATCTTCTCAGTAACGGTTATTCCAAGTGTGACAACTTCATCCAGGATTTCAAAGAAGGCAAGTTGCAAACCCAGCCAGGCTGTAGCGCAGATGACACGCTTGAGGCTGTGATTTTAAAGGAACTTTCTGTAATCAGAGATCACGCAGGAAAGGCATGTTTGCGTGAACTGCACAAGACAAACAGTCCCCTAACAATGGCGGTTTGTGGCTCAAAAGGTTCGTTCATCAACATCTCACAGATGATCGCTTGTGTTGGACAGCAGGCCATCTCTGGCAAGAGAATTCCAAATGGATTTGAAGACAGAGCACTGCCTCACTTCAAACGACACTcaaaatttcctgccgcTAAAGGATTTGTAAAGAACAGCTTCTATTCCGGGCTAACTCCAACGGAGTTCTTCTTCCATACCATGGCTGGAAGAGAAGGACTTGTCGATACTGCTGTCAAGACTGCCGAAACTGGATACATGCAAAGGCGATTGGTTAAGTCGTTAGAGGATCTCGCGACCCAGTACGATCTTACAGTGAGGAACTCAGTCGGCGACGTGGTGCAGTTCATGTACGGAGGAGACGGACTGGATCCCACTGACATGGAGGGAAAGGACAAACCGCTGGACTATAATCGCGTGTTCAGCCACGTTCAGTGCTCAGTGCCAATGAAAGAAGAAGACCCACTTACTCCGGAGGAGATACTTAAGGATGCCTTACCAGCTATTGACGGACCTGAATTTGAAGACTGTGGGACTGAGTTTAAGAAAGATTTAAGAGCATTCGTGGAAGACATTGCCAAAAGGCAGGCCGGAAATGAAAAACATCCAAGTCACTCCACTTCCGTTTTTCTGGTAGTGTTGTCATGGGTAGACCGCTGTACCAAGTCCCAACTGAAGCAGTTCCTGAGCCTTTGTAAGGAGAAGTACTCAAGAGCAAAGATTGAGCCCAGTACAGCTGTGGGTGCCCTGTGCGCTCAGAGTATTGGGGAACCTGGAACACAGATGACTCTAAAGACGTTTCACTTTGCTGGAGTCGCTTCAATGAATATCACCCTTGGCGTTCCTCGTATAAAGGAAATCATCAACGCATCTCGGTCCATTAGCACTCCAATTATCTCCGCTCAGCTTATGAATGACAAAAATGCAGACGAGGCACGAGGGGTCAAAGGCCGGATTGAGAAAACCCTACTAGGAGAGGTTTCAGAGTATATCGAAGAAGTGTTCCTGCCTGACAGCTGTTTTATCCTTGTCAAACTGGCGATGGACAGAATCAAATTGCTTAAGCTCGAAGTTGACGTGGACTCAATACGATTTGCTATCTGCACTACAAGAAAACTTAAACTGAAACCCCAGCAAGTGACAGCCCTAAGCAAGTCTGAGCTGTGCATTTATCCAAGTGAGAGCAGTAAGTCGTCTCTACATTACACAATGCAGCAGCTCAAGACAGACTTGCCTGATGTCCTCATCAAGGGTCATAAAAATGTAAACCGCGCCATAATTCATGTGGATGAAGCTCAAGGAGATACTTACAAGCTGCTGGTGGAAGGCGATGATTTGTTGTCTGTTATGTCCACTGTTGGCGTTAAAGGCACAGCAACCACGTCCAACAACACGGCTGAAGTGGAAAAAGTTCTTGGAATCGAAGCTGCCAGGGCAACGATAATGAATGAAATCAACATGACCATGAAGAGTCACGGGATGAGTATCGATGCACGTCACGTGATGTTACTGGCAGACCTCATGACGTTTAAGGGAGAGGTACTGGGTATAACAAGGTTCGGCTTAGCAAAGATGAAGGAGAGCGTTCTGATGCTTGCTTCTTTCGAGAAGACGTCAGATCATTTGTTTGACGCCGCACTACACGGTCAGACCGACTCTATTGATGGTGTCAGTGAGTGTATTATTATGGGAATTCCAATGAGTATCGGAACTGGAATGTTCAAGCTTCTTCACAAATATCCTTTTTGTAGGACCGGGCCTCCAAGCCGCAGGAGTTTGATTTTTGACAACCCTGAATTCCACTTACCGGAATCAACCGCGTCAGTTGAACGGTAG

Transcript

ENSOFVT00000032670

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZL98	DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus OX=9031 GN=POLR3A PE=2 SV=1
O14802	DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens OX=9606 GN=POLR3A PE=1 SV=2
A4IF62	DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus OX=9913 GN=POLR3A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003075 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04983 all species →	RNA_pol_Rpb1_3	RNA polymerase Rpb1, domain 3	Domain	Interproscan
PF04997 all species →	RNA_pol_Rpb1_1	RNA polymerase Rpb1, domain 1	Domain	Interproscan
PF04998 all species →	RNA_pol_Rpb1_5	RNA polymerase Rpb1, domain 5	Domain	Interproscan
PF00623 all species →	RNA_pol_Rpb1_2	RNA polymerase Rpb1, domain 2	Domain	Interproscan
PF05000 all species →	RNA_pol_Rpb1_4	RNA polymerase Rpb1, domain 4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035698 all species →	Domain	DNA-directed RNA polymerase III subunit RPC1, C-terminal	Interproscan
IPR045867 all species →	Family	DNA-directed RNA polymerase, subunit beta-prime	Interproscan
IPR038120 all species →	Homologous_superfamily	RNA polymerase Rpb1, funnel domain superfamily	Interproscan
IPR042102 all species →	Homologous_superfamily	RNA polymerase Rpb1, domain 3 superfamily	Interproscan
IPR007066 all species →	Domain	RNA polymerase Rpb1, domain 3	Interproscan
IPR007080 all species →	Domain	RNA polymerase Rpb1, domain 1	Interproscan
IPR044893 all species →	Homologous_superfamily	RNA polymerase Rpb1, clamp domain superfamily	Interproscan
IPR006592 all species →	Domain	RNA polymerase, N-terminal	Interproscan
IPR007081 all species →	Domain	RNA polymerase Rpb1, domain 5	Interproscan
IPR035697 all species →	Domain	DNA-directed RNA polymerase III subunit RPC1, N-terminal	Interproscan
IPR000722 all species →	Domain	RNA polymerase, alpha subunit	Interproscan
IPR007083 all species →	Domain	RNA polymerase Rpb1, domain 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19376 all species →	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001056 all species →	Molecular Function	RNA polymerase III activity	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03018	RPC1, POLR3A; DNA-directed RNA polymerase III subunit RPC1	EC:2.7.7.6	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.