Gene detail

Detailed information of ENSOFVP00000030468.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020622165.1, synaptotagmin-like protein 5 isoform X2 [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000032885

GGACAGGTTCGTGGTGTGTGGGGTAGAGTAAGCTCATTATGTCCGAAGATATTTATATTGATGTCAACTATCTTACGGAATCAGAAAGAGATATCATCCTTCAAGTGCTTGCCAAAGACGAGGAACTACGGAAGCAAGAAAAACGTCGAATAAGCACGCTGAAGAATGAACTTGACCAAATAAAGAAGAACGGAGCGAGTCAAGAGGAAATTGAAACATCTCGCATTTGTGCTCGATGTCGATCTCCACTGGGTTTTATTATCAACTGTGGCGCCCTCTGTCCGAAATGCGAGGCTAGAGTATGCAAAGTTTGTCGAGAACTGACCAGTTATTCCTGGCTTTGTATACTGTGTGCGAAAATCAGGGAAGTCAGAGCTGAATCAGGTGCTTGGTTTTTTGAGCAAGAGAGGAGAAAGGCTGATAGGCCACAGCTTTATGGCTCAGCTTTAGTGCGAGCTTCCTTCAGGAGAGCAAAGCCCAGTACATCTGAGACAAGAAATGGAGTCAAAGATGGTGATCCAGGTTCACCCCCAGTGATCACACTTAACCTCAGCAATCATGGAAGACTTCACAGACCAGTGCCGGTTCACATGTCACGTCTGGCTGAGAAAGAtgtggaagaagaagaagacaaagGGGAAGAAGAAAATAATGCTGTAGAGATAAATCAGAACTACAAGGAGTATGTTAAAGCCACCAGAGTTCCACAGAAACCAGAGGAAGAGCAACACGACCCAGACGAGGAAGAGAAGGACTCCTCCTCGTCAGCTACTTCTACCCCTAGAGATGTAGATCACATTGGTGATGTGACCATTACTAACCCTGAGATCAAGTGCATAAGTCCTGATATTGCTGAACCAGAAGAAGGACACAGGACTCCAACGCATGATGATGATAGTATTGACCAGGCTTTTGCTATGTACGAAAGAAGTCACCCGGGCCCAAAGGCACTTCAGGAACAACTTAATATCCTCAGTATGGGTAGCCGCGAGAGTATTGTGAGTTATTACAGTGACGCAGGCGAAGGTCGGTTTGGCAATATAGCTGTCACGGGTGAAGTGCTTTTTGGATTGAAGTACAACAAGCACAAACACCAACTGGAAGTACAGATTCACCGAGCTAAAGACATCGCAGCCGCAGACGAGAAGAAAGGACGATCAGACCcGTATGTGAAAGTGTACCTTTTGCCGGATAAGACGAAAGGAGGAAAGCGCAAGACGAAGACAAAGAAAAATACTTTGAATCCAGATTTTGACGAAATTCTGACGTTTAAAATAGGGTTCGATGAGATGTTGACGCGCACACTTTGGCTGGCCATGTGGAATCACGACACGTTTGGACACAATGACTTCCTGGGTGAAGTGATGTTGCCTCTAGAGACGTATCAGGAATCAGGCTTCAGCTGGGATGACCCTTCACCCAACTGGTATCCACTTCATGAGAGGCGACCAGAGCCGTCCCTTATGTCATACTGCGGAGATTTGACGGTGTCTCTGATGTATGAGCCGGGCGACGAGTCCAATaaagacaagaaaaagaaaaagaaatcaggCGGAAAGTTACATATCCAGTTGAAAGAAGCAAGGAACTTACCAGCCAAGGACTCCAATGGCTTCTCAGACCCGTTTTGCAAAAGTTACCTGTTGCCTGACACGAGTAAAAAGACCAAACACAAAACTGCGGTCGCCAAAAAGAATCTGAACCCCGTGTGGAACCACTCTTTCTGTTATGAAAACCAGACCATCGACGAGCTTAGGAACCGCGTCTTAGAACTGACCGTGTGGGACTTCGACCGAGGCTCTAGCAACGACTTTCTCGGGGGCTTGCGGTTGGGTTTGGGAAATAACACCGAGCCGTGGGACGATTCACAGGGACTGGAGATACAGGCGTGGCAGATGATGCTTGACAGACCGAACCAGTGGCACGAGCATACACTGAACCTGCGATGGAGTATGGATAGCCAAATAGAGTAAACTTGCGCGCTGGTTAGACTTTTGTCTCTAAGGTGAAAATGGCGCAGTGTGACTAGAAACTAGCCCCGGAAAGATACTCTCGCAGTGAGCTTTGAAACATTCCCATGGGGACTTATGGTGTTTCGAAATATTTCTGTTCAGCACGCGAGAATACTATTATaggatatttttaaaaaggcCAAAGTAGGTGGTTCGCAACCACAAGACTTCGTCCCGTGACAAAGATTTCTACCCtaaaaattgaaatttacaGTACTAGCTCTCTTAAGTTAAATTTTGTAACAGGCAGTTCAAACTACTATCGACGTTAAACCACGTCTTTCGTAATGGGGTTAAATAAATTACGGAGATCTTTCGGAGGAGTTCTTCCGAGACAAATTGTTAACGTAAATTTATTAAGTTATTCAACATTTTCTTGCAAAGGTAAGCAATTTGATAGATTCGTATGGTACAAAATACTAAATATTTTTGTAATCCACATTTTAAGCGTCGAAGGCGTTTTTGGCAATACTACACGCTGAATTTCCAGGGTATAAAAAATTGTCGCTGCATTTCCAGGGTATACAAAATTGTCCTTTGTCCAGCTTTTCAAGATCAGcgtatttttaagttaaaattcATAACTACACAGGAACGTTTTCGTTCATATGTACCAAATATTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R0Q1	Synaptotagmin-like protein 4 OS=Mus musculus OX=10090 GN=Sytl4 PE=1 SV=1
Q8VHQ7	Synaptotagmin-like protein 4 OS=Rattus norvegicus OX=10116 GN=Sytl4 PE=1 SV=1
Q96C24	Synaptotagmin-like protein 4 OS=Homo sapiens OX=9606 GN=SYTL4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000239 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02318 all species →	FYVE_2	FYVE-type zinc finger	Family	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR010911 all species →	Domain	Rab-binding domain	Interproscan
IPR041282 all species →	Domain	FYVE-type zinc finger	Interproscan
IPR043567 all species →	Domain	Synaptotagmin-like 1-5, C2B domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45716 all species →	BITESIZE, ISOFORM I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0042043 all species →	Molecular Function	neurexin family protein binding	Interproscan
GO:0070382 all species →	Cellular Component	exocytic vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000030468.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.