Gene detail

Detailed information of ENSOFVP00000031029.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_022788843.1, signal transducing adapter molecule 2-like isoform X1 [Stylophora pistillata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000033492

TatgttgaaaaaaattgctCTAGGTCTATAATGCCGTTATTTTCTAGTTCTTCACCCTTTGACCAAGATGTTGAGAAAGCGACAAGTGAACTCAATACCACAGACGATTGGCAACTTATTATGGAAATCTGTGACCGTATTCCACGGACACCGACTGGACCCAAAGATGCATTACGTTCAATAATGAAAAGAGTAAACCACAGAGTTCCCCATGTTGCTATTCAAGCGCTTACACTCCTGGCTGCTTGTGTGAATAATTGTGATAAAGTGTTCCACTTGGAAGTGTGCTCCAGGGATTTTGTTAATGAGGCAAAAAGTATAATTTCAAGGGGACATCCCAAAGTAACCGAAAAACTGAAAAGCCTGATAAAGGAGTGGTCTGTCAGCTTCAAGGATGACCCACAGTTGAGtctAATACCATCGCTCTACAAAGAACTTAAAGCAGATGGAATTAGTTTTTCTGACAGCTCCAAGGACTCTAGTTCAAGTTCACCAAGTTCGTCAAGTCATTCGTCAGCTCCTGCCGCAGTTAGTGGGCAACAAGAAGATGAAGATTTAGCAAGAGCAATTCAGTTGTCCCTTCAAGAAGCAGAAAGTAGTAAGCCCAAACTGAAAGTCTCTAGTTTGTATCCAAGCTTCAGTTCACCTTCACCAGCTCCTGCAAAAAGGGTTGAGGCCCAAAAAGTCCGAGCATTGTACGATTTTGAGGCAGTTGAAGACAATGAACTCACATTCAAGTCTGGCGAGATAATATCTGTTCTTGATGACAGTGATGTGAACTGGTGGAAGGGTGAAACAGCTCGTGGCGTAGGACTCTTTCCTTCTAACTTTGTGACGTCAGATTTGTCCGAGCCCGAAAGTCCGTCGAAGGTGGAAAAGAAGAAGGTACGTTGGGCTGACGAACCTAGGAACCAGGCCCCGACATCTGAAGCGTCAACAGCACCAGTGAAAACAGAAATCAGTGAGGAAAAAATAGACTTGTGTACAAACATGTTAAAGGGAGCCAATATCGAAGGCGAAGACGAGCAAGAGGAAACAATTCAAGATATGGAAGATGAATGTTACAGAATGGAGCCTCTTGTCAAGGGCAAGGTTGAAGAAAGTGAAAGAAAACGCCAAGAATTATCATCAATGAACGAACAATATCTGCAAGCGTTGAGTTTATACCAGAGGCTGATGAAAGAGCCATTACCAGTGCCCACGCTGCCTTATGGATATGGCGCTAATCCCCAGGCCCCTATGGGCATGTATCAGCTGCCTGGATCAACAGCACAGCAATACCCTCAAGCCACTCCGCTCTATGCCCCGCATCCTGCAGGTTATCCCCAAGTCTCCCCTCCTACGTCACTTCAGTATATGAGCGAGCCTGGTGCCGTTCTGGGGTCATCTGTTATGGGCACGGCATACTCGAGCCAGGGGCCTGTGCAGCCCTACGCAAGTCACATGTCTAACCACGTGACTTCAGCGCCTTACCAACCGACTCAGCCTAGCCAAGCGCATGCTCCGCCCCAGGCCCCGATGCAACCTCCAAGTAACGTTCAACAAACGTTTCCAAGCCAACAGCAAGTTCAACAGCCCCCAATGTCCtaccaacagcaacaacaaattCCGTACCAACAGGGGATCCCTGCGGCACCACCTGAGTATCCGTCCCAGAGCGCACCTCATGATTACTATGCCCAGTCTCTTGCGCAACCTAGCGTGGCGGGCTACTCGAGTTTTCCCGCGCAACCACAAATGGTTTACTCGCAGCAGCGGCTGCTTTGATAGTGACTGCGGTCTCGTGAATTCCTGACTTTGATTAGTTGTTAGTGGCAACGTTTTGTTGCTTTGAAAGGAGACACAAAATTCTCTTTCACTCGACAAGACGAGCGAAAAGAAGCCCATTCATAACCCCAAACAAATGAATTAGACCTGTCTGAGTCAGAACCGTCCTGTTAAGTAAATAATATTGATTGATGAATTTTTCAGAGCTCAACTAAAGGTAGTACTAAAACAGTTTCAGCGTTCAGCGTTGACGAAATTTGGGAAGGAATCCCTCAATAATAAAAATTGGTGTAATGAGTTGTATTCGTTGTTCTAAACCAAGGTCCATACATTACACTGTTTAATGGCGATTGATTAAGACGATTTCTACTTagaattagtagaattccactagtatactaatgcaaatgctgcaatctgattggctgagctactcgtatactatcagccattagagtacagtcgctgtcggtcgcgcacgaaatgcaatgttttaatagtttttccgcaattttgaaagaaagtttaaatgtaaacaagtagttaaattcccgagaaggctaaaagaagcacatttacgttttcttgacttcaaaaacttgaaaatattgaaaaagcgtgcgcgcgc

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P70297	Signal transducing adapter molecule 1 OS=Mus musculus OX=10090 GN=Stam PE=1 SV=3
Q92783	Signal transducing adapter molecule 1 OS=Homo sapiens OX=9606 GN=STAM PE=1 SV=3
O88811	Signal transducing adapter molecule 2 OS=Mus musculus OX=10090 GN=Stam2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005290 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species
Ubiquitin family	UBD\|Alpha-Helix\|VHS · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02809 all species →	UIM	Ubiquitin interaction motif	Motif	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF00790 all species →	VHS	VHS domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR002014 all species →	Domain	VHS domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR003903 all species →	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR050670 all species →	Family	Signal Transducing Adapter Molecule	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45929 all species →	JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0033565 all species →	Cellular Component	ESCRT-0 complex	Interproscan
GO:0043328 all species →	Biological Process	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04705	STAM; signal transducing adaptor molecule	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.