Gene detail

Detailed information of ENSOFVP00000031628.1 in Cyphastrea salae

Genomic Location: chr7:23746659...23779173
NR annotation: PFX13943.1, Brevican core protein, partial [Stylophora pistillata]
Species Cyphastrea salae · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSOFVT00000034178

ATGAATACAATTCGGTCTTTCGCAGATTTTGTAGAAATACGGCCGTGGCAACTGTTAGCTGGAAAAGAGAACATTACAAGCACCGCATCAGGTTTGTTTGCTTGTAAGAAGATATCCTTCCCAAATCCTTTCTATGGCGGACAGCAAGTTAAGGTTTTCGCCTCGGTGGGACATACTGTGAAGAGTCTTACTCCTCGTAATGGTGCTGCAATCTGGGTCGAGGATGTTACAGCCAATGGATTCAGTGTCTGCGTGGTGGAGTACGCGGAAGGATCAAATGGCACAACAGAAGTAAACTGGATGGCTTTGCAATCTGCACCGTCAGGATCTCAGATGGAAACTACTTCCTTAGACGCTTGGACAAGTGGAACAACGTGTAAGAAAATCGCATTCAAACAGGCTTTCAAGACTCCTCCAGCCATGTTTGTGACTGCTAGTCACCAGTTTCTCAAGAGACCCCAGGATGCCATGGCCATATGGATTGAAGACTTGAACAAAGTCAGCTTTAAAATTTGCCTCAGAGAAACAAAGATTTACGACGGAACACATAAAGACATAAAAATAACAATAAACTTCAGAGATCCTTTCTTTGCTCCTCCTGTGGTGATTGTGACGCCGAAACACAGATACAACAATAACATATCTTATTCGTCTAAATGTAACGCCGTTACCGCTTGGGTCGAGCATACCTCTACAACAGATACAAAGGTTTGTGTGAAAGATTACAACAGCAACGACAAGAATAAGGATATCATAACAGTTGACTACATAGTGACTGGAGACTTGGATCCATGCCTGAATGTGACATGTCATTACTATGGTCTGTGTAAGGCTTTTGGACCTCATGATGCCCGCTGTGTGTGCATGAACAGTTGTCCATCGTACCACGAACCCGTCTGCTCATCAAAAGGCACAACATACGACAATAAGTGTTTGTTTCAACATGAAATGTGTCTTCATCGATTGAACTTCACCGTGCAGCATCCTGGTAGCTGTGAAGgATTCCCTTTCCAGGGAGGCCGCCGTCACATGCCACATATTCCATCACTGGGGTACTCACACTGTGAAGTAATATCTTTCAAACCCTATGTGTTCTATCCTGACAAACCCATTGAAGTGCAAATCACTGTCAATCATATCGATACTACGGACAAATCGTATGTACACGACGCCGCTGTGTCGTGGGTGGAAAATGTGAATTACAAACGATTCACTGCGTGTGTGATGGCAGCAGGCTTCAATGAGCGAAAGTCAAATGCTAACGTCACAGTCGATTGGATGGCGTATCAAGCTGCTCCTATGGGAGGCGTCACCGGGAAGGTGCTCATGTCACAGTGGTGGACCGGGACGACTTGTAAGACTGTAAACTTCCCGTCTAATTGGCTGGCGTTCACGTACCTTCACAAGCCTCCCTTTTCAGAACATAACTCCATCTACTTTGTGAACAATAAACCTCCTCCTGGCGATCATAATAACGCCTTCTGTAAGGATATTAACTTCACCAGCTTTTATAACGGAATCCCAAACGTGTTTGTTTCTGCTGACCATTCTTCAAAAGGGGGGAATCTAAGTCCAGTTCATAATGCCATCACTGCTTGGGTAGAGTATATCAACAAGACTGGTTTTCGTGTTTGTTTTAAAGAGCTATTTGCGGCAAGATATGATCCCCTCTTCATTACTTACACCGTATTGTCAGAGATATGCCAGCCTGGATGGGGCTATTTCAATGGTTACTGTTACTTCACAAGCTCTGTGTGCGCTTCGTGGCTGACTGCTGTGTCAAACTGTTCAACGATGGGCGCTCATCTTGTGACCGTCCACAACCAAGAGGAAAACGTTTATATTCAGCACCGCCATAATGGAGAGAGATCCTGGATTGGGCTTAATGACAGAAGCGTAGAAGGATCATTTGTATGGACCAACAGAGAAATAAGTAATTTCAGGTTCTGGGCTCCGAAACAACCAAACAATCTCAGAAACCAGGACTGCGTGCACACTCTTGGTGCCAAGGAAGGTTACAGTTGGAATGACGTGTCTTGCAATAACTGCTACAACTTTACTTGCTTTAAAGaCATAGACGATTGCAGTATCAACTCTCATAGCTGCGGTGTCAATGCTGTTTGTCAAAATACCACAGGATCTTTCAAATGTACTTGCAAAGCTGGATTTGTAGGAGATGGCAAAAATTGTTCTGTTATATTTACTACACGTGGGAGTAGTGGACGGTTTGGAACTATTCAGAAATTCACCGTTCCCAGAAGCGCTCGCTATCTCATCAAAGCCTGGGGAGCCCGAGGAGGAACACACTCGTACAACTATGGATACAATCCGGGAACTTACTATGGCGGCAAGGGTGCGTACATTGAGGGCAAGTTCAGACTGACTAAAGGAACAGTGTTGAATATTGTGGTGGGACAGAGAGGAGGAGACTCAGTGGAGGTGAAAGGAGGACAAAGCACTACCAAGACAGCAGCTGAGCTAGGACTGTCTGTAGAGGACAATGCTGGtacggggggagggggtggaagTTTTGTTTATACTGTAAGTAATGTGCTTTTGTTAGCCgctggagggggagggggtgcttCAAGTGGATATAACGGTGTGGATGGTCAGGCGGGAACAAATGGCACCAGTAGTGTGGGGAAAATTGGGTCCAGAGTTCGTAAGGGAGGTACTGGAGGGCAGCCTGGTGAATGTAATAGTGCAGGTGCTAGTTACCATGGAGGAGTGGGAGCTGGTTGGTTTGCTCAAGGTTGTGAGAGAGAGGGCCCTCAACATGGAGAGAGAGGCGGATCGCGTGTTCAAGGCTGGACTGGAGGTCTAGCTGGTAGCATGAACAGCGGAAACAACGGGGGCCCAGCCCCAGGGGCGGTGGGAGGATTTGGTGGTGGAGGAGGGGGTTCAGAAGATAACGGTGCATCCGGTGGAGGGGGAGGGTACTCTGGGGGAGGCAGCGccaacaacaaactcaacccacatatgacgcctggtccgggaatcgaacccgggacacattggtgggaggcgagcgctctcaccactgcgccaaccctgctccccataaGAGAGGGAGTCTGTGTGATGGCCCCGTGA

Transcript

ENSOFVT00000034178

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P07439	Lectin BRA-3 OS=Megabalanus rosa OX=6680 PE=1 SV=2
Q61361	Brevican core protein OS=Mus musculus OX=10090 GN=Bcan PE=1 SV=2
P55068	Brevican core protein OS=Rattus norvegicus OX=10116 GN=Bcan PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000086 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR050801 all species →	Family	Calcium-Dependent Lectins in Immunity and Development	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR033989 all species →	Domain	CD209-like, C-type lectin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22801 all species →	LITHOSTATHINE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000031628.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.