Gene detail

Detailed information of ENSOFVP00000032056.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020617919.1, smoothened homolog [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000034679

ATAACTCAACTCCATCTCAATGAATCTGCTTGCAAGAGGCCTTTGGTTGAAACAAACCACACATCCAGCTGGTATGAAGGAATAGAAGGGTGTGGAATTCAGTGTGAAAATCCTATCTTCACCACTGAGGAACACACAAGAATTCACAGATTTGTTGGAGCATTTGGAAGTCTTTCATTTACATGCAGTCTTTTTACAATGATAAcatttctgattggctggaagTCACAGAATCGCTATCCATCAGTGATCCTCTTTTACATGAACATTTGTTTCTGTGCAGCCTCAATGGGCTTTCTTGTTCAATTTGCTGATGGGGCCAGAAACCGCACTGTTTGTCGACAAGATGATACAATGAGGCTTCAGGAACCAAGTGAGAATGACTGCTTTCTCTGTATTGTAACCTTTGTCTTTGTGTACTACTTCTCAATGGTTGGCGCTGTCTGGTTTGTTATCCTGGCCTTTTCCTGGTCTATCTGCTTCAAGTCTCTTGGCAGCACAAGAGATAATTTTGCTGGCAAAGTGGTATACTTTCACATTGTAGCCTGGACATATCCTCTTACCCTGGCAATTAGTGTTCTTGCTCTGAAACAGGTTGATGCTAACTCTTTAAGTGGAATCTGTTTTGTGGGGTATCAGAATCCCAGCATGAGAGCCATCTTCTTGTTGGTACCTTTAAGTCTTGACTTACTTGTAGGAGGGATCTTCTTAACACAAGGACTTGTAACTCTGTGCAAACTACGCAGATCAAATCCCAATTTTTTAAGTAACAGAGCAGCACATAAAATAAAAGAGACTATAATAAGAGTGGGTATCTTTTCCTTCACATCATTTCTGACAGTATTTGCAACCTTTGCCTGTCATGTCTATGAATATCATAACCAGGCAATTTGGGAAGAAAGCTACAGGAATTTTATTAAGTGTATAGCAGAGAAGTCAGCCCAAGGACAGCCATGGAAAACAGTGTGTTCAGTAAATGAACGTCCTAATTTAAGTGTCATTGAGCTGGAGCTAGCCTCATTATTTGGAACAGGAATTGCAATGAGCAGCTGGACCTGGACTTCAAACACATTACAGACCTGGCAAAAATTATGGCGCAGAATAACAAGGAAAAACAGACATCCAGAATTAAGTCATTACAAATTGATAAGAAGGATGAAGAAGAATCGAATAGGACCAGCAGTGTTATATCCTGCTGTTCCTGAGGTGCATATGGATGCCTTAATGAAGATGGGTGAGAACATTCAAGCTCAGAGTGAAGTTCGCCACGGATATACACCAAAAGATGAAAATGAAGAGCCACTTAAACTTAAGAGTATTACTGAATTAACGCCTCAGGAGAAATTCAGTTAACAACTGGACTTTGTACATTGTATCATAggataaaatattttatttataaattcTGAAGGAAAGCTTTcataattttattataattgtGAATCTATTTGCACTTTTTTATTTACTAAGCTGTCCTTTACATATCACAAGCACTTCATTTGCCTTTAGgataaacaatgcaaagactTCTGATTAGTTTGACATCATAGTTAATTACTGCTAGTGTTGGTGCAGTAATTTGTTACACACATAAACCAGCACACACAAACAAACTGTGTGTGCACATTAAATTAAGACTTACCTTAATTTGTGTAAGATTCAGAAATTACAACTAGCAGATCTTCTCTTTGAATTTCATGGTGTGCTAGGATGAAAACCAAATATGAACTCTGTGAACATAGCAAGAGCTAAACAAAATCATGATAGTATtatattgttaaaaatatttaatatttaatttacatTCAAATGGACATTCTAAGCTTTTTGCTTCTTGCCAGAAATGAGATGTGTGTACTACTGCGCTTGTGTGTATACCTGTAATACAGTAGAGGGATGAATGATGGTTTGGAAaagctatttacatgtagcaTAGCCAATATTGCCAGGTGCTTAAACAGACAAGGACTTTTTGAATACTCGTAAGCATACTGATTTTGTATCAGTCTATTTGTAAACATAAATGTTACATGCGCAAGTTCCATGTATGTATTGACCTCAAAACACCTAGTCATGTTCCTCGTCAGAGCCCACAGATCAAACTTAGAGGTGTGCATTTTTTTGGCAAATGTTTTATAGTGGTGCTTATTACTATATGTTATTTAGAGATTTCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99835	Protein smoothened OS=Homo sapiens OX=9606 GN=SMO PE=1 SV=1
O42224	Protein smoothened (Fragment) OS=Gallus gallus OX=9031 GN=SMO PE=2 SV=1
Q5RH73	Protein smoothened OS=Danio rerio OX=7955 GN=smo PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007864 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01534 all species →	Frizzled	Frizzled/Smoothened family membrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR000539 all species →	Domain	Frizzled/Smoothened, 7TM	Interproscan
IPR015526 all species →	Family	Frizzled/secreted frizzled-related protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11309 all species →	FRIZZLED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005113 all species →	Molecular Function	patched binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0007224 all species →	Biological Process	smoothened signaling pathway	Interproscan
GO:0007389 all species →	Biological Process	pattern specification process	Interproscan
GO:0007417 all species →	Biological Process	central nervous system development	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0071679 all species →	Biological Process	commissural neuron axon guidance	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19739	CALHM2; calcium homeostasis modulator protein 2	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.