Gene detail

Detailed information of ENSOFVP00000033031.1 in Cyphastrea salae

Genomic Location: :...
NR annotation: XP_020625212.1, neuronal PAS domain-containing protein 2-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSOFVT00000035793

ATGTCTAGGGAAGCGAAATTAGCACAGGATAGAAAACAGCATTCTCAACGAGTACTGGACAGCGAAGACTCTGAAATCAAGCGATGCGACCGCAATCTACTGGAAAAGAAACGTCGTGATAAATTCAACGGACTCATCGATGAGCTTGCGTCCTGTTTGGCGGATCGATGTCATACAAAGAGAAGTACAGAGAAGAGCTCCATTCTGAAACTTACCAGTGAATATTTTCTTGAGCAGGAAAAATTGGCAGCTGAAAAGGCCGCGAATGAATTGATCAGAAACGTGAAACCTCCGTTCGTTACGGATGACGAGTTCGATTTTGTTTACCTGGAATCAATGAACATGGTGGTGTTCGCTTTAGATCAGACAGGGAAGGTTGTTTATATGTCAGACAATGCACTGTCTACTTTAGGGTATGTACCTGGACATATCTTGCAACGCGACATGTTTGAATTTATTGATGCACAGAACCACTTTACTTTCCAGGGAATGCTATCCGTTTTGAAAGACCGTGCAGACATTAGTCCCTCTGGTGAAAGTTACATAACACGTTTTGAACCGTTTTGGTGTCAATTTCGACGAGGTCCGTTTGGTCGAGAGAACGGTTTTGAACCAATCTGCTGCTTTGGAGCGATAGTTAGAAATTTATTGAGCGAGGAAAACGATGAAACTTTTGAAGAAGTTTCCAAATCACTCATTATCCTAGCGAGACCTTTGAACGTTCCAGTTGAAAAAACACTCCTCAAAGCTGATGGCCGACAAACGAAATTTACAGCAATATTGAATATGGAAGTGAAATACGATTACCTGGACAAGCGAGTCGCGGCCGTCCTCGGCTTTTTCCCTTCGGAACTAAGTGGAAGTTCTTTGTATGAATTCTGCCACGTCGATGACCTGGACGATTTGGTCGAATACCATAAAGTTTTGCTTTTAACGGGAAGAATAACAACAAGTTATTACCGTCATCTGACTAAAGGACAATCGTGGGTTTGGCTTCGATCTCGCTATCATTTATCTTACAGCGATTGGACTTCCAAGCCCCAGGCGGTAACTTGTCTAACTTGGGTGGTTCCTTTTCGTGAAGTTTGCGCAAGACAAGCAGAGGTCCTGTCGCATGACAAAGAGACCTTCGCGCAGATTTTAAATGGTACAAACGGCACAGCTGGAAAGTCGACTTCTTCAAATAGCTCGATATATTTGCCAGTGGTTGCTTCCCCGTGTTCGGAAAATGGAGCTGGAGAAAAGATTCAAGCGCTGTTTCCGCCGATGGGAAGAACCAGCGCTCAAGAATCAACTCGTAGCACGACGCCGGAATCATCGGTGGCTCGGACGCCTGGATCGGAGGAAAGCCAGAGCGATTGGGCATTGATGATTCCGAGCTCAGCTGACATGGATGATAATCAGTGTATTGATTTTCAAGAAAGCTTCCAGTTTTTAAGGAGCCTCGATTTGCCAAAGGACCTGACAGGTGCTCAACAATCTCTTCACCGATTTCTGTTGGAAACATACATGCAAGTAATAAACTCTTTTAACAAACAGGTGGAAGAACTCAGCGCAATTCAGAAGCAGATCAAGATTCAAGGAGAGATTCGTGACCTGGTAGAGCGACTCGAGAAGGAAAGATCTGCAAATGACGTCGGGAATGAATATACCACGACTAGAGAGatgcttttaaaatttgaagaaatgcgTCGGGTTTGTTTGGGTACACAAGCTGCGAAACCCACCGCCGAAAGTGCTGCCATTTGCTCCCAGCGACTTCAAGAGATTGAAGTTGAAAGTCGTCCCGAAGAACATGAAAGCTCTGTCACCTCAGAAACAAATcaacagatgaaaaaagaaatagtTGAACAAAATCAGTCACCGATGCAAGTAGAAGAGTCCTACTCCACACAAACGCGACCAGACATTTTCTTCAATCAAGAGGACTGGCTTCAAACGCAAGCACAGCAAGCTCAAATTCAACAGCAAGCCCTTCTTGACAATCGCTTTCAAGAGTTCGAATACGCCGTTACTTCGGAAAAAAATCAACATATGACCAACGAAGTAGAGGAGCCGAGAAAATCACCGATGCAACTGACAGCAGCCAAGTCCACACCGAACTTTTTCTTCAAACAAAAACACTGGCTTCAGACGCAAGCGCGACAAGCTCACACAGAGCCAGATATTTCCATTAACCAAGAACGCCAGTGGTTTGAAACACAGACACAACAAGTTCAACCGCAACAGCAAGCTTTCGTGATCAACTCGCAATATCTACCGCAGTCGGACCAGCTGATGCTGTTTCAGCAGCCGCACTTGCTAGCTCAGCAATTACATCAAAAGCGATTGGAAGTAGAAGCAATTCAGACATTAGAACAACAACCACAACAGCTCGAACTTTCTCCCAGCTCAACATCTGGCGGCGTTTCGCTGCTCATAAATTCTCCGAATGCTGTCTCGCAACAAGGAACATTATCTGTTCAAAGTGGCATGACAAGCGATCTCTCGTTGACAAGCATTCCACAGCAGGATCCTCGCAGTCCGAATGATTGTTTGTACGACTATCAATGGTTTTGA

Transcript

ENSOFVT00000035793

Protein

Uniprot

Gene family

Uniprot term	Description
O61735	Circadian locomoter output cycles protein kaput OS=Drosophila melanogaster OX=7227 GN=Clk PE=1 SV=3
Q5R4T2	Basic helix-loop-helix ARNT-like protein 1 OS=Pongo abelii OX=9601 GN=BMAL1 PE=2 SV=1
Q91YA9	Basic helix-loop-helix ARNT-like protein 1 OS=Nannospalax galili OX=1026970 GN=Bmal1 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	bHLH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF13426	PAS_9	PAS domain	Domain	Interproscan
PF08447	PAS_3	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR000014	Domain	PAS domain	Interproscan
IPR047230	Family	Circadian locomoter output cycles protein kaput-like	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR013655	Domain	PAS fold-3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46055	CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0032922	Biological Process	circadian regulation of gene expression	Interproscan
GO:1990513	Cellular Component	CLOCK-BMAL transcription complex	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09026	NPAS2; neuronal PAS domain-containing protein 2	-	Transcription factors	ko03000	deepkoala