Gene detail

Detailed information of ENSOFVP00000033287.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020604383.1, TOM1-like protein 2 [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000036091

AATTTCGACGTGAGATCCTGGGAAGGTAAACCCAAACGAGGCTTACTATTTAAAGGAAATGACGTCATTGTCAAAGAGATTCCAAGATGGCTTCCCTGTTTGGAGCGAACCCTTTCTCAACACCAGTAGGGCAGAGAATAGAGAAAGCCACTGATGGGAACCTTCCATCTGAAGATTGGGCGGCGAATATTGAAATTTGCGACGTTATCAATGAAACGGAAGAAGGGCCAAAAGATGCTGCCAAAGCTATAAGGAAGAGATTATCAGGAAATAAGAATTTCAAGAGTGTTCTGTTGACTTTGACGGTGCTTGAGACTTGTGTCAAAAATTGTGGCCATAGATTCCATGTACTTCTTGCCAAGAAGGAATTGCTGGATGAACTCGTGAAAGTTTTAAATCCAAAGGGTAACCCTCCACAAGTTGTTCAAGATAAAATTCTATCTCTGATTCAAGACTGGGCAGATGCCTTCCGTGGGTCACCTGAACTATCTTATGTGCTGGAGACATATGAATCACTTAGAGCACAAGGCATGGAATTTCCTGCCAAAAACTTAGATACACTGTCTCCAATCTACACACCACAAAGGACACAACCAGAGAGACCACCAACAGCCTCAGTACCATCCAGGCCACCTCCATCTCAGCCTCCAGTGGTTCATCCACAAGGCATCCAACCTGTCCCTTCAATGCAGGCACCCAGTGGTCCTGTGGTACCTACACCTGAACAGCTCGGAAAAATACGATCTGAGCTTGACATTGTACATGGAAACATCACTGTCATGTCTGAAATGTTGACAGAAATGACACCTGGACAAGAGGAAGCTGGAGATTTGCAGCTATTGCAGGAATTGAACAGAACATGTCGTGCCATGCAGCAGCGGGTTTTAGAGCTGATTGAAAGGGTAGCAAATGAAGAAGTAGTAGGTTTGCTTTTGAGTGTTAATGATGATCTAAATAATGTGTTCATTCGTTACGACCGCTATGAGAGATTCAGACAAGTGACTTCTCAGCAAAGTGAACCATCAGAAGCTCCACCAGAACCCCCACGACCTGCTGCTGTGGAGCCATTACCAACACAAACTGGAAGGATGACAACAGCCTGGCCAGAGGATGCGGCAAGGACTCCAGGTACAGTGGACATAGCTCAACCAGTGCCGCCAGCACCAGCTCCAGCTCCAGCTCCAGCTCCAGCACCAGCCCCTGGTGCTGGAGATTCATTGATCAGTTTTGATGATGACCAGGTTACTCCTTCCCAGGCTCCTTCAGTCAATGCCATGACGTCTCAGATGCAAACTATGAACGTTGGACCTAGCCCTACTGACCAAGATGATGAATTTGACATGTTTGCCCAGTCAAGAAAAAGCACATTTGAAGAGAGCAGAAAAGGAGGATCTTCGTACACAGATAATCTTCAGCCATTTGATCGCACAATCGCTAGTACCATGTCCATTGAAAAGACAGACCCTAATAAGACAGAAGAAGGAAGtcCAATGGATGATATTGAATCATGGCTTAACGTCACGGAAACTGATGTGGCCAATGCGGAAGCCGCTGCTGGCCAGCAAGCTGCTAATGGAGACACTCTAACTTCTTCAGAGTTCGACCAGTTCCTTGCGGATCGTGCAGCAGCAGGCGGTCAGCGGACTGCTAGTGTAAAGTCAGGTGCCAGCCGGCCAAGACAGAGACAGATGCAGATGGAAAACCAAGCTGATGACGAAATGTTTGGCTTATGATTCACCTTTACAAAcgcttttttctttcaaactttCAAACATTGGTTTTGGAAATGTCTCCTTTTAACGGGCCCCGCAATCAGATTGTGGATGCCTGTTGtgtgacgttttttttttagttattgACAGAACTGGAGTTTCTACAGCAACAGCACCTTTGCAGCGGTCCAAGGGAACGTAATGCAACACTTCATTTAGTGACGTTACGCAACGGTTCAACATTGCGACACGCAACGTTTCGTTCCGTTACGACACTAGACACGACTGCGAAGGAGAATACAAGAGCCGTTAAAATGTAGAGCCAGTCAACGGCGGAGGCGCACCAGTCATTTAATGTAGCTTGTGCATGAATCAGTTGAAATTGTATTGTAAGGTAATAACGATATTCATTATTGGAACTTTGATCAAAATCACTCCAGCTGTCAGTAGAAAGTAATCAATTATTGGATGACTCAGTATTGAACCACATTATAAGACGAAAACCGAATTCAGTTATCATACACATGTAAAAAAGGAACGATAGGGATGTGGTTTGTTTATTCAGGCAAACTGCTCATGTAAATCTTGAATAGTGCATGTTAAAATTCTAATACCTGATGGCGCCGAGGTTTAAGGGActtaaaaaaagagaatttaTTCCTcaaactcaatttttttttgtaagccTTCGcgccacgttagaattttaatatattattggTAGGCTAAAAGCCAATCAAAATCTAGATGGCATGAAAACTAGTCATACAGTCTAGGAAACTATATAGTGCTTGCGAGAATTATCTTTTGAATTTTTGTAAGCCTAAGAATTCTTTAGAACAGAGCCGGATAGCTGTAATTATCTACGagaaagtaaagaaaaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZVM7	TOM1-like protein 2 OS=Homo sapiens OX=9606 GN=TOM1L2 PE=1 SV=1
Q5SRX1	TOM1-like protein 2 OS=Mus musculus OX=10090 GN=Tom1l2 PE=1 SV=1
O88746	Target of Myb1 membrane trafficking protein OS=Mus musculus OX=10090 GN=Tom1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005364 (this species only)
Ubiquitin family	UBD\|Alpha-Helix\|GAT · all ubiquitin genes in this species
Ubiquitin family	UBD\|Alpha-Helix\|VHS · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03127 all species →	GAT	GAT domain	Domain	Interproscan
PF00790 all species →	VHS	VHS domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR004152 all species →	Domain	GAT domain	Interproscan
IPR002014 all species →	Domain	VHS domain	Interproscan
IPR038425 all species →	Homologous_superfamily	GAT domain superfamily	Interproscan
IPR014645 all species →	Family	Target of Myb protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13856 all species →	VHS DOMAIN CONTAINING PROTEIN FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26401	TOM1, TOM1L1_2; target of Myb membrane trafficking protein 1 and related proteins	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.