Gene detail

Detailed information of ENSOFVP00000033690.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020605687.1, U1 small nuclear ribonucleoprotein 70 kDa-like isoform X3 [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P08621	U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens OX=9606 GN=SNRNP70 PE=1 SV=2
Q1RMR2	U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus OX=9913 GN=SNRNP70 PE=2 SV=1
Q62376	U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus OX=10090 GN=Snrnp70 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003410 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12220 all species →	U1snRNP70_N	U1 small nuclear ribonucleoprotein of 70kDa MW N terminal	Family	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR022023 all species →	Domain	U1 small nuclear ribonucleoprotein of 70kDa N-terminal	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR051183 all species →	Family	U1 snRNP 70 kDa and U11/U12 snRNP 35 kDa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13952 all species →	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005685 all species →	Cellular Component	U1 snRNP	Interproscan
GO:0017069 all species →	Molecular Function	snRNA binding	Interproscan
GO:0030619 all species →	Molecular Function	U1 snRNA binding	Interproscan
GO:0071004 all species →	Cellular Component	U2-type prespliceosome	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000033690.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.