Gene detail

Detailed information of ENSOFVP00000034186.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: CAH3162194.1, unnamed protein product [Pocillopora meandrina]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

ENSOFVT00000037097

ATGGATCTTCATGATCGTAGTATCAGGATGAATGAAGCAGAGATGTCAATGTTCTCACCATTCAGACCCATGCTAGGTCAAAGAGGAGACATTGGAGAGATAGAAAAGCTGATGGGCAATCAGTCTTTTTACATAGAGACAAAAATAGATGGAGAGAGAATGCAACTCCATAAACAAGGAGATTGTTTTATGTATTTCTCACGAAGTGCCAATGACTACACTCATGTGTTTGGTTCAAATGCGACTGCCGGTGTTCTCACACCTCATATTGCTTGTTGCTTCTCAAGTTCTGTTCATTCCTGCATACTGGATGGAGAAATGGTTGTGGTTGATAAAACAACAGATGTATGGTTATCCAAAGGCATGAATGTTGATGTGAAATCCTTAACCTCATATGAAAATGGTCACCATccttgttttattgtgtttgatATGCTTGTTATTAATGAGAAAAAACTTGCCAATGTTCCTCTTAGTGAAAGGATCAAATCGATGGAAAAAATGTTGAAGCCACAGCATGGATATCTTCAGTTTGTTGAGAGACGTGAAGCTTCAACAAAGGATGATGTAGTTAAAGCTCTTAATGATGCTATTGACAGAAGAGAAGAGGGCTTGGTTATCAAATCACCAGCTTCTATCTATAAGCCAAACCTGAGAAATGGAAGCGGTTGGGTGAAGATCAAACCTGAATATGTGGATAGTTTAAGTGATGAGCTGGATCTGTTGATTGTTGGTGGTTATTTTGGAGTTGGTCGCCGTAGTGGAATGATATCTCATTTTATGTGTGCAGTGGCCGTATCATCCAGCACTCCTGGGGAACAACCTCAAGTGTTCCACTCTTTTTGTAAGGTTGGGTCTGGTTACACTATGAATGAGCTGCGTGAACTAGATCAACAGTTGCGTCCACACTGGAATGCATTTGATACTAAAAAGCCTCCTAGCTCTATTATTCTGGCCCCCGGTTACAAAGAAAAACCAGATGTGTGGATAGAGCCATCCAAGTCAAAGATAGTTCAAATCAAGGCTGCAGAAATTATCACATCTGATAAGTTTAAAACTGGTATCACTCTTCGCTTTCCAAGACTGGAGGCTGTTCGTAATGATAAGATGTGGTATGAATGTCTGGACCTGAATGAGCTGGCCAGGCTAAAATCGATGGCAGAAGGAAAGCTGACGTACCAACACGCTAATGCTGAGGAGAAATCTGAACCTGCCAAGAAAAGACGACGAGAAGCGGCAAGAGTTGAACACACGCGTACTGTAGCGGAACATTTTAAACCAGCTGACGTGTCATCTGTTAAAGAGgTCTCGCAAATGTTTCAGGACAAGGAGTTTTATATTGTTAATGGTCCTTCTTCCCATTCCAAGGCTGTATTGGAGAAGAAAATTGCCGAGAATGGTGGCACTTTGACTCAAAACCCAGGACCGGACACGTTCTGCATCGTTGCTGACAGAATCAATGTGAGGGTAAAGAATATCATCAGCCAGAAACAATTTGATGTAGTGAAGGCTTCTTGGCTTATAAACTGCCTGGAATGTGGTGAAATGAAGGCATGGCTGCCAGATGACATGTTTCATTCGTCATCACGGACTGCTGATAAATTTGCTGAGGAATATGACCGCCATGGAGATAGCTACACACAGAATGCAACGAGTGAGTCCCTCAAGAAAGTGTTCGATAATGTCCGAGGAAACAATTCCTCAGTTCCACTATCAACAGAAGAAATACTAGAAATATCACAACGCTATTTTCCCGATAATTCGCCTCTGGGATTGTTCAAGCATTGCAGGGTTTACCTTGATCAGTACACTCGTGTTGGGGATAACTCAGTGGGGATACCTAATTGCAGTCTGGAACTGGTCGGTTTGAAGCTTCGCATGTATGGTGCCCAGGTTACCGGCAGTTTTGACAGCAAAGTGACACATGTCATTTTGGATGGAAGGGATCTTTGTCGTCTCGCTGAACTTCAAAAAGTAACGCAGGCACGGAAATTAAAGCAGCATCTTGTCACGTTAGACTGGGTCACGCAGTCAGTGGAAGCTGAGAAACTCTTACCGGAAAGACATTTTAGACCAGTTGCTTAA

Transcript

ENSOFVT00000037097

AGGTGTGCATGGATCTTCATGATCGTAGTATCAGGATGAATGAAGCAGAGATGTCAATGTTCTCACCATTCAGACCCATGCTAGGTCAAAGAGGAGACATTGGAGAGATAGAAAAGCTGATGGGCAATCAGTCTTTTTACATAGAGACAAAAATAGATGGAGAGAGAATGCAACTCCATAAACAAGGAGATTGTTTTATGTATTTCTCACGAAGTGCCAATGACTACACTCATGTGTTTGGTTCAAATGCGACTGCCGGTGTTCTCACACCTCATATTGCTTGTTGCTTCTCAAGTTCTGTTCATTCCTGCATACTGGATGGAGAAATGGTTGTGGTTGATAAAACAACAGATGTATGGTTATCCAAAGGCATGAATGTTGATGTGAAATCCTTAACCTCATATGAAAATGGTCACCATccttgttttattgtgtttgatATGCTTGTTATTAATGAGAAAAAACTTGCCAATGTTCCTCTTAGTGAAAGGATCAAATCGATGGAAAAAATGTTGAAGCCACAGCATGGATATCTTCAGTTTGTTGAGAGACGTGAAGCTTCAACAAAGGATGATGTAGTTAAAGCTCTTAATGATGCTATTGACAGAAGAGAAGAGGGCTTGGTTATCAAATCACCAGCTTCTATCTATAAGCCAAACCTGAGAAATGGAAGCGGTTGGGTGAAGATCAAACCTGAATATGTGGATAGTTTAAGTGATGAGCTGGATCTGTTGATTGTTGGTGGTTATTTTGGAGTTGGTCGCCGTAGTGGAATGATATCTCATTTTATGTGTGCAGTGGCCGTATCATCCAGCACTCCTGGGGAACAACCTCAAGTGTTCCACTCTTTTTGTAAGGTTGGGTCTGGTTACACTATGAATGAGCTGCGTGAACTAGATCAACAGTTGCGTCCACACTGGAATGCATTTGATACTAAAAAGCCTCCTAGCTCTATTATTCTGGCCCCCGGTTACAAAGAAAAACCAGATGTGTGGATAGAGCCATCCAAGTCAAAGATAGTTCAAATCAAGGCTGCAGAAATTATCACATCTGATAAGTTTAAAACTGGTATCACTCTTCGCTTTCCAAGACTGGAGGCTGTTCGTAATGATAAGATGTGGTATGAATGTCTGGACCTGAATGAGCTGGCCAGGCTAAAATCGATGGCAGAAGGAAAGCTGACGTACCAACACGCTAATGCTGAGGAGAAATCTGAACCTGCCAAGAAAAGACGACGAGAAGCGGCAAGAGTTGAACACACGCGTACTGTAGCGGAACATTTTAAACCAGCTGACGTGTCATCTGTTAAAGAGgTCTCGCAAATGTTTCAGGACAAGGAGTTTTATATTGTTAATGGTCCTTCTTCCCATTCCAAGGCTGTATTGGAGAAGAAAATTGCCGAGAATGGTGGCACTTTGACTCAAAACCCAGGACCGGACACGTTCTGCATCGTTGCTGACAGAATCAATGTGAGGGTAAAGAATATCATCAGCCAGAAACAATTTGATGTAGTGAAGGCTTCTTGGCTTATAAACTGCCTGGAATGTGGTGAAATGAAGGCATGGCTGCCAGATGACATGTTTCATTCGTCATCACGGACTGCTGATAAATTTGCTGAGGAATATGACCGCCATGGAGATAGCTACACACAGAATGCAACGAGTGAGTCCCTCAAGAAAGTGTTCGATAATGTCCGAGGAAACAATTCCTCAGTTCCACTATCAACAGAAGAAATACTAGAAATATCACAACGCTATTTTCCCGATAATTCGCCTCTGGGATTGTTCAAGCATTGCAGGGTTTACCTTGATCAGTACACTCGTGTTGGGGATAACTCAGTGGGGATACCTAATTGCAGTCTGGAACTGGTCGGTTTGAAGCTTCGCATGTATGGTGCCCAGGTTACCGGCAGTTTTGACAGCAAAGTGACACATGTCATTTTGGATGGAAGGGATCTTTGTCGTCTCGCTGAACTTCAAAAAGTAACGCAGGCACGGAAATTAAAGCAGCATCTTGTCACGTTAGACTGGGTCACGCAGTCAGTGGAAGCTGAGAAACTCTTACCGGAAAGACATTTTAGACCAGTTGCTTAATACCAAACGAGCAGTCATTCATTCTTGCTCTTAGTTCTCCGCGCCAGAAAATACTGGGAGATCTGGGTGCCATCTTCGAAGGCTATGAGGTTATTTGCCTATTCAACTAACGAGGGCCTTTCCAAAGGCCATTATGGACCAAACCATAAAGTCATTCTTCCTTGTGACTTAATTGGAAACGTTCATGAAACATTGAAccgttttttgaaatattacccaATTAATAACCAATGATAGAGTACCGAAAATGTATATTTATTAAATAGTCGTAAATTTTATCACAACTGAGAAGTAATCACATCATCTTCCGCAAAATGCAAAAGTCTAATCGTTTTGTGATCAACCGAACTCCTGAATATggaattttataaaataacacAGTAAAAGTACTTTCCAATACTATATTGCAAAATAAACACCTTGTAAATcgctaaaacaatttttacaacATAACCCCTTTTTTACAGACCATGGTATTAGGTGCTAAATACTGATATCAAAATTATTTCATCGTCAGTTGGCAAAAAGCTGAATGATcctccggaaaaaaataaattttaatttcctTCACATAGGTTGTGCATGACGGCTGGTGTCTAAATCGAGTTGACGACACGTGCGTGACGCAAGTGTTCACCAAACAAAATTACTGGAGGTGCCCGTGATTTCGATTGCGTTACTTCCACAAAATCTTTTTCAGACTAAATTCTGTTTGTCTTGAAAGCAAGTACCcaattaagcctggttcacactagcgacataacgacataacaacattgacataatgacataaagaAATgattagtttttttctttatgtcgttatgttcatgttattatgttcctactatgttgtta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90YB1	DNA ligase 4 OS=Gallus gallus OX=9031 GN=LIG4 PE=2 SV=2
G3GTP0	DNA ligase 4 OS=Cricetulus griseus OX=10029 GN=LIG4 PE=1 SV=1
Q8BTF7	DNA ligase 4 OS=Mus musculus OX=10090 GN=Lig4 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002928 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04679 all species →	DNA_ligase_A_C	ATP dependent DNA ligase C terminal region	Family	Interproscan
PF16589 all species →	BRCT_2	BRCT domain, a BRCA1 C-terminus domain	Family	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF11411 all species →	DNA_ligase_IV	DNA ligase IV	Family	Interproscan
PF01068 all species →	DNA_ligase_A_M	ATP dependent DNA ligase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012309 all species →	Domain	DNA ligase, ATP-dependent, C-terminal	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR012310 all species →	Domain	DNA ligase, ATP-dependent, central	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR000977 all species →	Family	DNA ligase, ATP-dependent	Interproscan
IPR044125 all species →	Domain	DNA Ligase 4, adenylation domain	Interproscan
IPR021536 all species →	Domain	DNA ligase IV domain	Interproscan
IPR029710 all species →	Family	DNA ligase 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45997 all species →	DNA LIGASE 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003910 all species →	Molecular Function	DNA ligase (ATP) activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0071897 all species →	Biological Process	DNA biosynthetic process	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005958 all species →	Cellular Component	DNA-dependent protein kinase-DNA ligase 4 complex	Interproscan
GO:0006297 all species →	Biological Process	nucleotide-excision repair, DNA gap filling	Interproscan
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0032807 all species →	Cellular Component	DNA ligase IV complex	Interproscan
GO:0051103 all species →	Biological Process	DNA ligation involved in DNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000034186.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.