Gene detail

Detailed information of ENSOFVP00000034552.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: KAJ7386250.1, Mitochondrial Rho GTPase 2 [Desmophyllum pertusum]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

Transcript

ENSOFVT00000037494

ATCTCGACAATGAAGGAGGTTCGGATATTACTTGTGGGCGATCCACAAGTCGGGAAAACATCTCTCATTCTGTCTCTTGTCAGTGAGGAATTTCCTGAAGAGGTCCCTACTAGAGCTGAGGAAATAACAATTCCAGCTGATGTAACTCCAGAGAAGGTTCCCACTCACATTGTGGATTATTGTGCTGTGGAGCAGTCTGAAGACATGCTTATTGATGAGATTGTAAAGGCAAATGTAGTGTGTGTTGTATACGATGTCACAGCAGAGGAATCTCTTGAAAGAATAACATCTTTCTGGTTACCACTCATAAGGCAGACTGCAGAGGAAGAGACTTTGAAACCTGTTATTATTGTTGGTAACAAGtctGACCTCATGGATGGAAGTACAATGGATACTGTCTTACCAATAATGAATGACTACACTGAAGTGGAAACATGTGTAGAGTGTTCAGCAAAGGACCTGAAAAATATATCTGAGATGTTTTATTATGCACAGAAGGCAGTCCTTCACCCTACAGCTCCTCTGTTTTCTGCTGAAAGTAAAGAGTTAAAGCCATTATGCCGGGCAGCACTTACAAGAATATTTAAGATATCAGACACAGATAATGATGGCTTATTGAATGATAAAGAACTAAATGAGTTTCAAAACCGATGCTTTAACACCCCATTACAAGGTCAAGGACTACAGGATGTTAAGAATGTTGTAAGAAAGAATGTTGAGGGTGGACTGCGCGATGGTGGACTCACACTACAAGGTTTTGTGTTTCTACATGCATTGTTTATCCAGAGAGGAAGACATGAAACAACATGGACTGTCCTAAGAAAGTTTGGATATGGAGACGATCTCAAGCTCAGAGCTGAATATTTATGTCCAGCGATCGACATGGGAACAGACCAGACTGCAGAATTATCAGATGCAGGATATCAGTTTCTTATTGACTTGTTCAACAGGCATGACAAGGACGAAGATGAAGCGCTGAGCCCAGGAGAACTACAGgAGTTGTTTGCTATTTGTCCCACAATGCCATGGGGTGAAGATGTTCTTAGTTCTGTTGAGACTAACAGCAATGGATGGATAACTCTACAAGGATTTCTAGCTCAGTGGACACTAACAACATTCCTGGATTACACAAGGACGTTAGCATATTTAGCAATGTTTGGTTACATTCATCAGGAAAATGAAACTCCACTCTCAACTGCAATAACAGTTACCCGCAGTAAAGTTGTTGATATGCAGAAGAAACAGACTTCCCGTTCTGTATTTCAGTGTTATGTGTTTGGGCCGCCTGGTGTTGGCAAGACAGCTTTTCTTCAAGCTTTTTTAGGACGAACTCAAGAGccTGGTGAGGCGGAAAGGGAATTATCAAGTTATGCCATTAATCTTCTAGAAGTTAACAGACAAGAAAAATACTTAGTGttacgTGAAATCGAATGGGAGAATTCAGGATTGTTGTTACACGACAGACGGTGTGATGCAGCGTGTTTTATGTATGATTCAACGGATACTGCTTCGTTTACCCAAGTGATACAACTACGAGAGAAACTTCCCAAGACTGTCCCATGTATGTTGGTGGCGGGAAAAAGCGAAGGAGTTCCAGCAAAACAGgaTTTTGAAGTGCAGCCGTCGTTGTACTGCACGTTAAACAAACTACCACCCCCTCAGCCGTTCTCATCCCTCAGCAGACCAGACATGTGCAGGCATATCTACAACAGCCTGGCGCAAATGGCAGTCTACCCACACCTTTGCGGCCCCAATGCAGACAGTGTGACGTCATACTGGATCGTTGCCGGCTTAGCTGCCGCTGTCATAGCAACAGCCGGtgttttcgtgttcagatactTGAGGAAGGGAGGTTCAACCACGTGACAGCAGTCACAGGAAACCCAGGAAAACATGAACACGTCCACTTGTCGTGATAGGACAAGGCATTTATTTTGCCACGGATTTGAACCTCGCGGTTATTAAAATAAAGAGGTTCTATATTCATTATCCAAGACAACTGAAAAGGTCGTTATCGTGCCAAAGTGGAAAtagtttatttttgttcttattACCGACTACAGTGTTTTTAATTGAACATAATTCGCCGATGTCAACAAAGCCTGTGCATTCGGCTTCTTTCTAGTGTTGTATGTAATTTTCCTGCCACTAAAGAGATTGAGAAAAGGAATTTATGATACTGTTATTTTTAAGCTGAGCTTTGAATACTAGTGTTTCGACAGAAGGATGTCGGTTCTGGTGCGCTTGTGAGCTTGCACAAGCATTTAAGAGTTCGTCAACAAGACATGAATTTTAACATGAAGTAAAGTAACTTTGAAGACTGTGATCTACATCTAGACATATCAAAATGCCTAAcgtttgaattaaaaaaaatgcgtCCTATAAAACACATAACAAGATGTAAATCTGAAATAAGATAAATCACGTCTCCAGGGCCGATCTTTCCATTCCTTAGATagatcctgggaacgaggttgcccaGGAAACCCTCAAAAAATCTTCTTGATGCACTCGCATTTAAGCAAAACTTCAATGGCCAAACAAATACCAGAATTGCTTTGGTTTGGACATAAAAGAAAATAGAAGTAGTGCACTTATTTACATACTTTTAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NVC5	Mitochondrial Rho GTPase 1-A OS=Danio rerio OX=7955 GN=rhot1a PE=2 SV=1
Q2HJF8	Mitochondrial Rho GTPase 1 OS=Bos taurus OX=9913 GN=RHOT1 PE=2 SV=1
Q8BG51	Mitochondrial Rho GTPase 1 OS=Mus musculus OX=10090 GN=Rhot1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003988 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08356 all species →	EF_assoc_2	EF hand associated	Family	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF08355 all species →	EF_assoc_1	EF hand associated	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021181 all species →	Family	Mitochondrial Rho GTPase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR013567 all species →	Domain	EF hand associated, type-2	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR003578 all species →	Family	Small GTPase Rho	Interproscan
IPR020860 all species →	Domain	MIRO domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR013566 all species →	Domain	Mitochondrial Rho GTPase 1/3, EF hand associated, type-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072 all species →	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005741 all species →	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0031307 all species →	Cellular Component	obsolete integral component of mitochondrial outer membrane	Interproscan
GO:0047497 all species →	Biological Process	mitochondrion transport along microtubule	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07870	RHOT1, ARHT1; mitochondrial Rho GTPase 1	EC:3.6.5.-	GTP-binding proteins	ko04031	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.