Gene detail

Detailed information of ENSOFVP00000034872.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: PFX20229.1, putative cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL1 [Stylophora pistillata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7XDB8	Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL10 PE=2 SV=1
Q8LR50	Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL1 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL1 PE=2 SV=1
Q851C7	Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Oryza sativa subsp. japonica OX=39947 GN=LOGL4 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005834 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF03641 all species →	Lysine_decarbox	Possible lysine decarboxylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR034201 all species →	Domain	RNPS1, RNA recognition motif	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR031100 all species →	Family	LOG family	Interproscan
IPR005269 all species →	Family	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15481 all species →	RIBONUCLEIC ACID BINDING PROTEIN S1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0061574 all species →	Cellular Component	ASAP complex	Interproscan
GO:0009691 all species →	Biological Process	cytokinin biosynthetic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000034872.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.