Gene detail

Detailed information of ENSOFVP00000035816.1 in Cyphastrea salae

Genomic Location: chr8:17060676...17068189
NR annotation: XP_020605688.1, coilin-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSOFVT00000038832

AAAAGTAATTTAGGAGCtatgaaaacaaattcaaagaaAAGCAAGACCGGTATCAATAGTAAGGGAAAACACGTTATCACTGGCAAAAAGACAGTAGATGGTATCATCACTGGTAAAAGGGTTGTAGATAGCGACACTTCTTCCTCTGAGAGTTCAACagaatcatcatcatcatcatcatctagcTCAACAGAATCATTCTCAGAGTCATCACATGAATCAGGGCCATCACATTCACACTCAAAAGTAAATGGTTCAGTATCTCGAATAGCCAGTGCCGAGCTAATTAACAATGATAAATTGCCAGTGCATGAAAGGATAGGAAAGGATGTTCAGCATAAAATTGCAAAAGATTCATCTgcaagaaaaacaggaaaagaTGAAACTACTACTAGGGTATATTTGAAATTACACACTAATAGCAAAGAAAATGGTGCAATTAGAGAATCTTCCTTGTCATCTTCCAAATCTGCAAATGCAGTAAGAAAGGATACCAGGTCGtcttcatcgtcatcatcatcattgtcaagttcttcaagtgaaaaCGAGGAAGAGAAAGCAAAACTTGTCAACAACAAGGAAACGTCATCCTCATTATCACATCCTATGTTGCCATCACCATCATCTCAATCATTTCCGTCACCTTCACTACTTAGGGGGATACAGGTACAGGATACAAATGAAACATCTGTCAATCAGTCGCCCATCCACTGTGTCCCCGAAAAGATCTGTCTCTTTGGACAAAAGCAAGTTCAACAGAGCACTAGTAGAGGGCAAAATAAAAAGCCAGACGCCAGCAATTCAACAAGCCACATTAGATTTGATTCAGAAGAGTCGGACGAAGAAACTGTTAACGAGCAGCAAGAGGTTACATGTAATTCCACAAAGGACATCACTGATGACTTAAATACCACTCTAACATCTTCGAATACTTCAGAAAGTGAGCAAACCCATGAGGCAAGCTTGGAGAAAGCTGCCAGTGAATGTAAGGAACCAGTCCAGCGTGATTACAGTCTTTGTAGTCCACTTCATGGCCCGCCCAGAATTAAGGATAGAATAGCCTACAAGGTTCTCGAATTATCAGTTTCCTACACACCAGAAGTGTCAAGTTACAAGGAGGGTActgttgttaattttgacgcAAGCAGTGGAGCTATAACGATAGAACTTTCAAAGGAGTCGCTGAAAAAGACGCGAGGTGATGGAAATATTACAGGAAAGTTTGAGTTGGTCTATGACGAAATTGAAGAAAACGCAGACATTATGGAAGAAGACCCTGAGGTTGTCGTGCCGTGGAACTCAATGATAGATCCTGTTCTAATCgagtaaaaataatttgaaaattttctgtaCACATGAATGTGGCGTGTAACAGAATTTAACCACTGATGAGGCATTTCTTCACGGCCGAGCAAGAGAAAGATAGCTAGTACAGGAAGGTAATAAGGGAGAACATCTGTAACAGAAAGCGTCAGTTTATATATTGTTCTACTTGAAAGGCAGGATGGAAACTTCGAGACATTTAGCACCTACTTAGGTTTTGTGTTAACGGCAAACCGCAAACGACAGTTTCAGCTTAGGGGTTTGACGTAACTACGAAAGCGTGCAAGAATTCTCTCACCGATTGAAGAGGTCACCATATTGAATTTCGAGACAACAGCGGTGTTTGGTTGGCAACAAAAAGTGCTATTTTCACTCATTCGCAAAGAATTACATCTGAACTAATAGtaaaaaaaatactgttttaCATAATTTTGATATCAGTACGTGGTATAAACAAAAATTTAGGATAAAAGACTTCCAGGTGTTAAAATCACTTACGGGGAAAGCCTAGTTGCCGTTTGGGGTTTCCGCCGAAAGCCTTGGTGCCAAATGTCACTAATAGTGAGGACCCTCAATCTATGAATACTTGAATTTTTTGTGCACTTTTTGTTTGATGGCTACACAGTTAGGGCTCTTGAGATCAAACCAAAAGATAAGAGTGAGGCCCAGGTCAAACGGCCGCGGGAATAcacaatttcttcaaattttctgtacgaGACAATTAGCCCATATGATGAACAAAACTAACAATAATTGGCTTTTaatgctattttttttattatttctagtGATGATTTTCGAGGATGGTCTTAAACCGTTGCGCTGAGAAATAACGCTTTTACTCAAATACAATAAAACGTACAGATCATTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q09003	Coilin OS=Xenopus laevis OX=8355 GN=coil PE=2 SV=2
Q5SU73	Coilin OS=Mus musculus OX=10090 GN=Coil PE=1 SV=1
P38432	Coilin OS=Homo sapiens OX=9606 GN=COIL PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007144 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for ENSOFVP00000035816.1 in Cyphastrea salae.

InterPro

InterPro term	Type	Description	Source
IPR024822 all species →	Family	Coilin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15197 all species →	COILIN P80	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000387 all species →	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0015030 all species →	Cellular Component	Cajal body	Interproscan
GO:0030619 all species →	Molecular Function	U1 snRNA binding	Interproscan
GO:0030620 all species →	Molecular Function	U2 snRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000035816.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.