Gene detail

Detailed information of ENSOFVP00000036472.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020626649.1, pentatricopeptide repeat-containing protein 1, mitochondrial-like [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

ENSOFVT00000039545

atggcggcttcGTTAAAGGTGCGCTCTGGTTGTTTTTTTCGCCATTTCAACGATTCTGGACGATGTTTATGGCAAGGATTTATCGCAAGAAATACGCTGAGTACTAGCGCCTTCCATTCATATTCCAAATCTTTACCACTCGTGGCGAAAAAGTGGAATGAATCACGACCGACACATGAGGGTTTTCCTAAACCTCGACCACTCGCTCATTCCTTTCGTGGGGATAAAGGAGGTTCAAAGTCACATTCTAAGGATAGTAGGTATAGGAGGGAAGATACAGAGCTCGATTCCGACGCAGAGACAGAGAGTGAGGACGAAGAAGACTTGAGCGGTAAATCTCGGAAATCAAAGAAGGGATCTGGGAAGTCTAGGAGATTAAAAAGTCAGAAATCTGTTGGAAATGTCGTTTTGAGTCCTTCCAGATATCTGTTTAAAGACTTTCTACCGGGGCATGGGGAAGTAAAGCGATGGGAAAGAAGATATGCATCAGAGCACAGAAAAGGAAAAGTGAATTGGTTTGCGAGGCAGATGCTACGCCTTACTCAAGAGGGCAAGATCGATGAAGCCCTTAATCTCTTAGCATCTATGAAAGCAAACAAACTTCATCCTCCTGTAGAGGTTTACAACATCTTCATTTCTGCATATGCCAAGAGAGGTCAAGTCAGGAAAGctttaaagattttcaatgATGTGAAGAAGAGAGGACTGACGCCCACAGCTCACACCTTCTCCAGCTTGTTCAGTGCTTGTACAAAGGCGTCAACTCCACAGCATGCTTTACGCCATGTAGAAAAGCTTCTGGCTGAAATCAGGAAAAGGACTGCAGACCAGGACTTAGAGATGAATGTTATCACAAATAATGCTGCTATCCAGGCTTTAGTTATTTGTGGTGACCCCCTCCAGGCATTTGACATTTACCAAGAAATGCAGGACAACAACGTTGAACCAGATGGCCACACCTTTTCGTCATTGTTGGCTGCCTGCTCGTTTGATAAAGTTGAAGGGCCTAGCACAGCTTTTAAACTTCTTGAAGAAATGAAATCACTTCAGATACAGCCAGACATTTATATTTTCAACTCAGTGTTAAAGGTGATGAGAGATTTTAAAGCTTCTACTGAGGAGAAAAGGTCACAATTGTCCAAGTCAAGTGCTGATGTTACAGAAGAAAGTTCATGCGTGCAGGATCCATCTTATCCTCTTGATGAAGAAACATCAGAAGGTGAAAGTAGTGAACTGAGTTCTGAAGAAAGTGCTTTACAGGAAGGGTACAACAATGACAATGATTTACAGCTGCATCACTATTTTCCTGGTGTGGAAAAGTTTATTCAGATGATGGCCGTTGAAAATGTGTCTCCTGATGTACGGACTTTTCACCTGCTTCTTTACATGACGTCatcaaaagaagaagaagattaCTTGATGGAGCTGATGAAGAGCTGTAACATCTCTCCTGATGCTGCTTTCTATAACACTCTTATCAAGAAGAAAGCAGCAGAAGAGGGTGTACAAGAGGCAAAGATTTACATGCAGGAATTGAAAGAAACATTGAATATTTCCCCATCTGAAAGATCGTACCATGCCTTAGCTCATGTCTGCAAACGGCAAAAGCAAGGACTTGTTTTGCTTGATGAAATGAAGTCTGAGGGAATTGCCCCAGACCAATCTGTGTATGGAATACTGATTTCTGGAGCAGCTAAAGAAAGACAGTTTTCCTACCTCATCCAGTTGGTCAAGAGGATGACAGATGATAATATCCAGCCTAATGATAGGATGATGGGAGTGCTTGAGCGGGCTTACAATTTACCTTGTAACAAACCTGTTATTGCGAGAACGATGGATGACCGTTTggtgaaattgaagaaattccGATTTGTAGAACAGCGAGGGTTCCAAACCTTCTTTGAAAACTGGAAAGCAAAAATACTGGCAAGAGATACTGCGATGAATGAAACTGGGAAGAGTTCGCACATTGAACAGAATGATAAAGACACTGTTGAGGAGACAAGACATGACGTCAGTGATGACGAAACTAGCGATGATGACGAAGATTCTAAATTTAGCCATCTCTGA

Transcript

ENSOFVT00000039545

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009404 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13812 all species →	PPR_3	Pentatricopeptide repeat domain	Repeat	Interproscan
PF13041 all species →	PPR_2	PPR repeat family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47936 all species →	PPR_LONG DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000036472.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.