Gene detail

Detailed information of ENSOFVP00000036793.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020608686.1, hepatocyte growth factor-regulated tyrosine kinase substrate-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Sequence

CDS

ENSOFVT00000039906

aagacTTATACCTGTGTAAAATTAACTATTTCTGAGGGTTTAATTTTTACTACCAGTCCAGAACCAGTCAAAGAACAAATTCTAAGCATGATTCAGACATGGTCAACTGCATTTCGCAAAGAGCCAAAATACAAAGTTGTTCAAGATACATTTAATCTTATGAGAATGGAAGGATATAAATTTCCTCCGGTGAATGAGTCAAGTGATGCTTTGTTCACAGCGGAAACAGTAAACTGGCAAGAAATTGTAGTTTGTATTAGCCttcatttctcttttttcttttattatattCAGCACCACTGTAGAAAATGTGGCCAAGTGTTTTGCCAGAAGTGTTCTTCTAAAGTTTCTATTATTCCACAATATGGCATAGAAAGAGAAGTACGCGTCTGTGATCCATGTTTTTACAAGATCAATCCATCCGTCCCAGCTAAGAAatctgaacaagaaattcgagATGAAGAGGAGGAAGAGTTACAGCTGGCCATGGCATTGTCACTGTCACAGGAAGAGGCTTCTAAGGATCTTGCACGATATCTCAATCGGTCTTACTGGGAGGAGAGAAATGAAAGACAGAGTTCAGGACAAAGATCAAGTCCACCTGCCAGTGCTCCAGAACAAATACAGATTACTAACAGTTCCACTGAGatgaaagtggggatattaaaaggaaaaaagaaaaagaaggaaaggaaaCTGCAACGAGACAACTCCGAACCCACGGTGGATGGTGTCAATTCACCTACGTCAGAAGTATCAGAAGCTATGGTGAAAACCTTTCAAGGTAACGTGGAGATGTTACTTGAACGAATGCAGAAAGTCTCTGGTCAGGGAAAACACATCGCTATGGATGCTACAGTGCAGTCTCTGTTTCAAACTGTCAGCGCCATGCACCCGCAGATTCTGAGACTTATCGAGGAGCAGGAAGAGGAAAAAGCAAAATTCGAGGCTCTTCAGGTGAAGCTGGGCTTGGTACATGAAGCACGCTCGTCCCTAGAAGAGATGCGAGAACAACACCGCGAGAAAGTTCGGCAGCAAGAATTAGAGCAAGACATGCTGCGACGCATGCAGATAGAACAGAAACTTGAGCTCATGCGGCAGCAGAAGGCCGAATACCTGGCTTATCAGCAACGCTTACAGACTGAACGACAGGCGGTcattgaacaacaacaacagcagcaacaaagACTCCAGTATCAAAGACAgatgcaacagcaacaacagatTCCATACGGTGGCATCCAGTACCCACCCGCGGGTGATTCTAGTCCCTACTCGTCATTAACTTATGTTCCCATGACAGCATCGAGTACACAACCTTACAATCCCCAGAATGTACCTGCAGGGTATACCCCAGCAGTACCTCCCGGATATCAGGTTCCTGATGCTCCACCACCCTCGCAGTACCCTTCGCCTCTACCGGGGCCTCAGCCGAGCTCGATAGAGTATCAACCACCATCATATGCATCCCAAGTTCCACCGGAAGCTGGTCCAGCATCACTTCAGCCATACAACCCTGGGGCTCCTCTTCCAGTTCCAACTGCTCCTGCACAAGTGCTTCCCCAGGCACCACCCCCGCAGTATGCACAAGTTAGCTCCCAACAACCGGCTGCTCAGCCAGTCTATGGACAAACAGGAAGTCAGCAGCCACCGGTGCAATCCTCGCCACTGAATCAGTTACCAGGAGCACCACCTGCAGGTCCTACTGGGCAACAACCTCAGTATAATCAGATTCCTCCACCACAAGGTCAGTCCCAACACCTGCAGCAAACACAATATTCCAACCCGGCTCAAACACCACTTGTAGCAGAATCTGCACCACCCCAGTACCCACAACCTCCATCCCAGGTCCCACAAACTAAACCACAGCAGACTTTCCAACCTCCCCAAACTAACGGATTCCTTCCGCAAGGAGATACCTCACGGGGATCCCCCCAAATGATGTTTAATTCTGCACCGACACAGCCACAACATAACGTGGTCCCATCAAATGGCCCTGCTTCGTTTCAACAAGGGCCTCCAGTGCAGCCTGGAGCCCCATTGCAGCAGGGACCTCCAATGCAACAAGTTCCCCCAGTACAGCAAGGTCTCCCAATGCAGCAAGGGGCCCTAGTACAACAAGGGACAACAATGCAGCAAGGGCCTCCAATGCATCAAGGCGCCCCAGTGCAACAAGTGCCTCCAATGCAGCAAGGTCTCCCAATGCAACAAGGGCCTCCAATGCAGCAAGGGTCAACAGTGCAGCAGTTCTATGAACCGCAACAACAGCAGCCTCAGCAATACGCGCCTCAACAAGGTTATCAATCTACTCCAACTCAACCGCCACCTGGCCAACAGCAACCACCACAGTACTTTGGGTCAGCGCCACCTCCCCAACAATCGGGCCCAGCCCCCCAGAGACAGCTCTCAGATTTAGAACTGATCTCTTTTGATTAA

Transcript

ENSOFVT00000039906

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99LI8	Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus OX=10090 GN=Hgs PE=1 SV=2
O14964	Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens OX=9606 GN=HGS PE=1 SV=1
Q9JJ50	Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus OX=10116 GN=Hgs PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003104 (this species only)
Ubiquitin family	UBD\|Alpha-Helix\|VHS · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12210 all species →	Hrs_helical	Hepatocyte growth factor-regulated tyrosine kinase substrate	Domain	Interproscan
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024641 all species →	Domain	Hepatocyte growth factor-regulated tyrosine kinase substrate, helical domain	Interproscan
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR003903 all species →	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR017073 all species →	Family	Hepatocyte growth factor-regulated tyrosine kinase substrate/VPS27	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR002014 all species →	Domain	VHS domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46275 all species →	HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0031623 all species →	Biological Process	receptor internalization	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12182	HGS, HRS, VPS27; hepatocyte growth factor-regulated tyrosine kinase substrate	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.