Gene detail

Detailed information of ENSOFVP00000036950.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: XP_020615996.1, crossover junction endonuclease EME1-like [Orbicella faveolata]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

ENSOFVT00000040079

TTCCGAAAGAGTTCCCCTTACAAGCTTGTACCTCAAAGTATGATCGCCAATGTCATGGCCGTGTGCCCAGACGTCGATCCTAAGGATGTGACCAAGGATCTGATCATCACAGGAAGTGCAACAAGGACAATCAACAGAATCTTGGATGGTCAGTTCCCTGCAATAGTAAATGTTGATGTTGACGCTCAAAGCACATCACTGGAAACCCCACGCCAGGAAGAAGTGAAAAGAAATGCAGCTGAGTCCTTATTTAACTCCAAGAATCCATCAACCTCTGTTAATAGAGTGAACTCATCACAAAGTAATAAAAATGACTCTAGCGAAACTGATGTATATTCTGACACAGATAGcgataatgatgacgatgacattGTAATTGTTCAAGAAGAGCGAAGAAGTTTATTCAGTGCATTGAAGAGTCGAATGAATAACAAAGAATGTGGAAAAAGACGTTCAGTTCAATCAAAACGTCCCAATGCGATCGCTGTTGAGGAAACATCTGATCTTCTAGGGGGAGAATGTATGAAAAAGGGTTCAAAGAACAAGAGAACAAGTGCTATTGATCTGTCTTTCTCAGAGGATGAGTCAAGTCAAGAGGACAGCCAGTTCAAGCTAAACAGTCTAATACAATCGTTTGCTACTGAAACACAAACAGCCAACCATGACGACTGTGTTCTAGTTGAAACACAACAAGGACAACAAAGTAAAAAGGCAGGTCCTTCACACAAGAACACGGATGCTAGAAAGAAGTGCTCTCAAATACATGACAGCAAACTCATAGAATTATCTCCATCTAAGCATGACACTGACAGCTGTGAAGACAGTGATGACCTTCCTTGTGTTTTACCATCGTCTTTGTATTCAGGTAGTGAAAGGAATGGCCATTCTTGTAAATCTCTTCCCAGTTCATGTACAGACAAATACAAAAGTAGTGACTCAAGTGCACAAGAAAGTAATAATATAGACTCTCATCGTGGTTCTGAAATCCcagcaaagagaaagaaaaggTCACCAGAGGAAATAACAAGACAGAGAAATGAGGCTCTTCTAAAGAAACAACCAAAAGAGCGTGAACGTCAAGACAAGAAGGAAGCAAAGGAGAAAGGAAAACAAGCCAGAGCTCAAGCTAGAGAAAAGATAAAAATGTCTAAAGATAAAGAGAAATTACTGAAAAAGGCAACAAGTATGAATCAGAAAAACAATCGATTGGATGGATGCATCAAGCAAATAGTGGTCTGCATTGATCCTGGAATTTTGACCAGTGGCCAGCTACCAGATGACAATATCCTCCTTCAAAAGCTGGAGTCCCTAGGGGCAAGTCATAAGATACAATCCCAGCTGATTcctgacgtcatcacttggcagAGAGCTTGTGTCCAGCATGATGTGCAAGGAGAGACACTTCAGATCTCCACTAAAACTACCATCACCGACGCGCAACATGCGGTGCTTCGTTTGTCTGCAATCAAGTTTGTTGAACTGGTTTTTCAATTTCGTGAGgAAATGCAAAATCCTGCTATCTCAGTTATTGCTGACGACGAAACGTTACTCACATTCTGTGAAAGAGCCCTGACTATTTACCCAGGAAAAATTATTACCCTTGTTGTTCTTGGTCTGGAGAAGTATTTCAGaGATGCCAAGCTTACAGAAAAGCGTCAATTTCGAAGCGCTGTTCTCGGCTCAAGCTCATCGGACACCGAAAATGTCAGcggtaaaaaacggaaaaagtCTAACAAGGAGTCTGGACCGAGTGTCATGGTGTCTAGAGTTGACGTCGAAGAGGCGCTTGTAGACTTACAGATCAAGAAACCGAAATGTCGAGTGCGCATGTGTGAAACAGAAGAGGAGTTTGCTGATCTGCTGACCATGTTTACAAAAGCTGTGGCTGAAGCACCTTACAAGAAGAAGCAACCGGAGTCGTTTAGTTTCTGTGTTGAAGGTGGAGAAAAAGGATCTGTGAAGGTGTCAAAAGAAGGAGAAGGTCTGAAGAAGGTGTGGCAGCAGCATTTCCAGCAGTTTAGGAATGTGTCAGCTGAAATGGCGGCTGCCATAGTTGCTGTATCGGTATCAAAAATCTCTTCACTGATTCttatacattttattttattcagctTGGGAGAAGTCCGTCGCGGCGCCGGTGTACTGGCCACTAGTCGGAGGATTGGACCCGAGCTTTCCCGACGAATTCATCTTCTTCACACGTGTGAAGATGGTGAACAGTCCATGAAGTAA

Transcript

ENSOFVT00000040079

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5NVA9	Structure-specific endonuclease subunit EME1 OS=Pongo abelii OX=9601 GN=EME1 PE=3 SV=1
Q8BJW7	Structure-specific endonuclease subunit EME1 OS=Mus musculus OX=10090 GN=Eme1 PE=1 SV=1
Q96AY2	Structure-specific endonuclease subunit EME1 OS=Homo sapiens OX=9606 GN=EME1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004929 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02732 all species →	ERCC4	ERCC4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033310 all species →	Family	Mms4/EME1/EME2	Interproscan
IPR042530 all species →	Homologous_superfamily	EME1/EME2, C-terminal domain	Interproscan
IPR006166 all species →	Domain	ERCC4 domain	Interproscan
IPR003892 all species →	Domain	Ubiquitin system component CUE	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21077 all species →	EME1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0008821 all species →	Molecular Function	crossover junction DNA endonuclease activity	Interproscan
GO:0031297 all species →	Biological Process	replication fork processing	Interproscan
GO:0031573 all species →	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0048476 all species →	Cellular Component	Holliday junction resolvase complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000036950.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.