Gene detail

Detailed information of ENSOFVP00000037274.1 in Cyphastrea salae

Genomic Location: chr9:1049306...1061874
NR annotation: XP_020604123.1, DNA-directed RNA polymerase I subunit RPA49-like [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSOFVT00000040457

GAAGAATCAAGATGGCGACAGCAAAGTTAGAATATGAACCGAGGGAGGCTTCTTCTAGTGTGAAACCTTTTGTCGTCCATTTTACCAATGCTGCCTTGAAACAAAACATAGGTGATAAAAAAATACGATTTGGTTGTTACCAGTGGGCAGACAAGGCAGATCAAAGGAAGAAACAAAGACGAACTCTGATTGCAGAAACAGAAGAAATGGAATATATTGGTCAAAACTTTGGACCATTCTCCAGATCTAATGGCTTGTGCAAGTATGTCCTTGGAGTTTATGATAAGAAAACAGAGGTGATAAAGATGTATGACACAGAGATGATTACTCTTCAACCACAAATCCTTGGTACTGCTGAAGTGAACCAGGAAGAGGATGCTCCAGATAGTAAACTAGATCTTTCTTTCATGGAAAAGAATGACCTTCTTACAGAAGCCTTTGGCAGCAATAAGAAGAAGCGAGCCATGGCTTCTCGACACCGGAATAAAGTTGACAAAAATGAACTAAATGAAACAGTTTCAGATGTTTTAGAATCACTAGCCAAGGAACCAATGGATACTACAGATGGTGGGAATGAACAGCATTCATACATACCACCATTTAATATCAATGCTATCACGGTTTCTGACATTTACAAACTAGATGATATCATTACTTCTTTGGAATATGAAGCTTTACAAGAAACATCTCTTGAATTCAAGGATGCAAATAAGCAGAAGATAAATGAATGGAGAAAGAAAGGGAGGTTTCCAGAATATGTTTTACAGCATTTAGATAAGATGTCAATGAAGTCATCACAGCAACTTCATCAGTCATGCTGTTGTCTTCTTTACTTATCTTACATGATTACAATGCATGGTCTTACTAAAAAGGACTTGAAAAAGAAAgACCCTTTGCCTGGAATGCCAGGGGTAATAAAGGAAAGACTGTTGTCaatgttttctttggaaaagGAAGAAGCTAGggAGGTTCCCCGGAGACTAAAGGATAAACTTGTGTCATACATATTAGTGCTGGCCTTGATGATTGATGAGTTTTCGCTGGAGTGCACAGTTATAATGAGAGATCTTAAAATGCCCGAGCAAAGGTTGATCAAACATCTGAGAGGCGTTGGTTGTGTTATAAGAACATCAAGTGTACAGAGGAAGCACAAGCTTGAAGACAGCTGTAGCATTTCATCAAAAATTGCAGTTCTTACTGTTCCACTACCTCCTTATTTCCTAGGCCATAATTTACATGGGAAATGAATGCCTCTAAAATTAATATTGAATTTTGGTCATGGAAAGCATGAAAATTGTGTCAGGATTCTGATCTTTGCAGTGTTGgtggtttttgttttcaagattATAGATTTCCCTTCATGGGtttattacaaaattaaaatgataaatattatattaattgtaCTAGTTGCCCTTTGACCAAAGTCCAGTCCAGCCATGTTACCCTTGCAAAAATATCAATGAACCTCTCTCATGGTGATCTAATAAAGTATATTAAACATAAAACCAAATGAACCAACCATGTTAAGATGATAAccagtttatttacaaaaaatgttatttaattTCACATCTTTGTTGGATAATGTTATAAACAGTAACAAAGACAATGTTTATCATTAAACTGAGTTTTGCAGTTTGAAACAGTTACAATGGTTAGTTGCTTGAATAATACAATTACGTTCTTGGAGCCAAAAAATCCCAGTCAATTATCAATTTACAGTTGATAATGGTAAGTAAATTTACCAGTTATGCAATGCTTTTGAGTGATATATCAtgagtcacttgtattttcttgccATACACACTAGCCTTTAGGCGAGTTTGATAACCAAGAAAATACAAATGATATGAGGGATATCCCCATGGTATACCACGAGAGAGTGTTGCGTAACTAGTTTATACCATGTCACAGAAAATACAGTGGCCAACACAAACAGTTTCTATGGAAACTACTGGTACTATCTGTGTTCATGCACTAACATCCATGTCTAATATCATTAGTTTTCTCCACATAATTTATCAATACCTTGTCAAGCAGGGGAACAGGCTAGGGTAGTATTGGAAAGGACCATTAGAAAGTCCAGATGGGTGTCAGCCTGTAAACACATTTAAAGACAAAATTTCCACCTGTTTAGGTATAAATCAGTCAGTGTTTACAGAttaatacccccccccccctgcagtGCTAACAGTCATGTATGCTTCACTATTTTTCAAGTCTACTATAATAATTGATTTTCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GLI9	DNA-directed RNA polymerase I subunit RPA49 OS=Xenopus laevis OX=8355 GN=polr1e PE=2 SV=1
Q9GZS1	DNA-directed RNA polymerase I subunit RPA49 OS=Homo sapiens OX=9606 GN=POLR1E PE=1 SV=3
Q8K202	DNA-directed RNA polymerase I subunit RPA49 OS=Mus musculus OX=10090 GN=Polr1e PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006486 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06870 all species →	RNA_pol_I_A49	A49-like RNA polymerase I associated factor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009668 all species →	Family	RNA polymerase I associated factor, A49-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14440 all species →	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001188 all species →	Biological Process	RNA polymerase I preinitiation complex assembly	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0006362 all species →	Biological Process	transcription elongation by RNA polymerase I	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03005	RPA49, POLR1E; DNA-directed RNA polymerase I subunit RPA49	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.