Gene detail

Detailed information of ENSOFVP00000037298.1 in Cyphastrea salae

Genomic Location: chr9:23963004...23988855
NR annotation: KAJ7379527.1, Isoleucine--tRNA ligase, cytoplasmic [Desmophyllum pertusum]
Species Cyphastrea salae · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSOFVT00000040489

ATGAAGGCTGGTGGAGCTTTCAGAGTATTAGTTGATGGTTATGTGACAGGTGAAAGTGGTACTGGGGTCGTCCATTCTGCCCCAGCCTTTGGTGAgGATGATTACCGGGTGTGTTTAGCCAGTGGAATTCTACAAAAAGGAGGTAAACTTCCTTGTCCTGTTGATGCCAGTGGAATGTTCACTACTGATGTGCCAGATTTCAAGGGACAGCACGTCAAGGATGCAGACAAGAACATCATGAAATGGCTCAAGCAGCAGCAGAGATTAGTACACCAAAGCACTCACAAACATAGCTATCCTTTCTGCTGGAGGTCAGACACACCATTGATTTACAAAGCTGTTCCTGGTTGGTTTATTCATGTTGAATCTATTGTTGACAAGCTTTTAACCAACAACAAGCAGTCATACTGGGTTCCAGAATTTGTACAAGAAAAACGTTTCCACAACTGGCTTGAAAATGCACACGATTGGAATGTGTCAAGGAACCGTTACTGGGGTACACCAATTCCACTGTGGGTCAGTGATGATTATGAAGAGGTTGTGTGTGTTGGATCAATGGATGAATTAGAGCAGTTATCAGGCGTCAAAGTTACGGATCTTCACAGGGAGAGTGTGGACCACATAACAATCCCATCTAGAACAAACAGGGGAGTTCTCAAAAGAGTCTCTGAGGTGTTTGACTGCTGGTTTGAAAGTGGAAGTATGCCCTACGCACAAGTTCACTAtccttttgaaaataaaaaggaGTTTGAAGCGTCATTCCCAGCTGATTTCATCGCTGAAGGGATTGACCAAACAAGAGGATGGTTTTACACCCTGCTGGTGATTTCAACAGCTTTGTTTGATAAACCGCCCTTCAAGAATCTTATTGTCAATGGACTGGTCCTTGCTGCGGATGGAGCAAAGATGAGcaagagaaagaaaaactatCCTGATCCAATGGAGATTGTTAACAAGTATGGAGCTGATGCCTTGAGGTTGTACTTGATCAACTCTCCTGTAGTCAGGGCTGAAACGCTCAAGTTTCAAGAGAAAGGAGTGAAAGATATTATTAAAGATGTGTTTCTGCCGTGGTACAATGCTCACAGATTCCTTTTACAGAACATTCAACAGATGGAGAGGGAAGGACAGAAGTTTATTCATGATGAAGCAGTTTTGTTGAACTTGGAGAACACACTTGATCGCTGGATTCTCTCCTTTACTCAGAGCTTGGTGTTGTTTGTTCATCAAGAAATGGCTGCATATCATCTGTACACTGTTGTTCCTCGTCTTGTCAAGTTCATTGATTATCTGACCAATGTGTATGTACGAATGAACAGGAAGCGACTCAGGGGAGACTGTGGAGACAAAGATCGCGAGGAAGCGCTCCAGACGCTGTTCAGTGTGATCTTTTCTATGATACGATTATTGGCGTCATTCACTCCATTTCTGACAGAGCACACTTACCAGTCTTTACGGCCTTACATACCAGAAAGTATGAAGTCTGGAGAAACAGAGAGTATTCATTACCTGATGATCCCACAGGCCAGGGAAAATCTGATTCACAAAGAGATCGAGAGGAGAGTAGCCCTGATGCAAACTGTAATTGAACTTGGTCGAGTTGTGAGAGATAGAAAAACTCTGCCATTGAAGTATCCCCTCCCTGAGCTGGTTGTTATTCATCAGCAGCAACAGAGCCTTGATGATGTGCTCTCTCTTGAAACCTGCATCAAGCAGGAGCTGAATGTAAGAAAGATCACTGTGTCTTCAGACAAACACAAGTTTGGCGTACAACTAAGAGCGGAACCTGACAATCAGACCTTAGGACGAAGGCTGAAGGGTGCTTTCAAACAAGTCTCACAAGCAATTAAAGATCTTTCAGACAAGGAAGTTCAAGATTTCCAGGAGAAAGGAGAGTTGATGGTAGCCGGTCATTTgctttctggaacagatttgaAGGTGAAGTATTCCTTTGATCAGAATGGTTCCACTCCTTCTGCGTATGAAGCACACTCTGATGGCCAGGTGCTTATTCTGTTAGATGTCACTCCGGATCAGTCGTTGTTATCTGAGGGTGTGGCACGAGAAGTAGTGAATCGTATTCAGAAATTACgaaaaaagGCGCAACTTCAGCCGTGCGATGACATCACCATTGTGTTTGACGTCACACAAGGTGAACAAGACTTAAATGACGTCATCAACACACACAAAGAATACATCGAAGATAGTGTCAAACAGCCACTCGTGCCCAACTCCCACTCGCCTAACCTTCCTTTGATAATCAGCGAGAAAACAGAGGTCAAAGGCAGCATGCTTGATCTGAAGCTGCTACGAGGCCACCAGAAAGAAGACAACAAGataacagcagcagcagcagcagcagaaCCAGTGTGTAGGTTTGTTAATGTACAGCTGTGTGGAGCTGCAGACCTCAAGGGAACTGTTCTTCTTGAGAATCCTCACGGGACTTCAGTTATTACACTTGATCAACTTAAACGACACGTAGCCATGATGTTTGATCAACACGAGAGCGTGTTAAAACTGTCTCTGTCAGCAACTTGTGACTCGGTTCTTACCGCTCAAGACTTGTCCAAATTACACGGCTGTCAGTTGTACGCTTTCGTTTAG

Transcript

ENSOFVT00000040489

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P41252	Isoleucine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=IARS1 PE=1 SV=2
Q8BU30	Isoleucine--tRNA ligase, cytoplasmic OS=Mus musculus OX=10090 GN=Iars1 PE=1 SV=2
Q21926	Isoleucine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=iars-1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002531 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19302 all species →	DUF5915	Domain of unknown function (DUF5915)	Domain	Interproscan
PF00133 all species →	tRNA-synt_1	tRNA synthetases class I (I, L, M and V)	Domain	Interproscan
PF08264 all species →	Anticodon_1	Anticodon-binding domain of tRNA ligase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023586 all species →	Family	Isoleucine-tRNA ligase, type 2	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR033709 all species →	Domain	Isoleucyl tRNA synthetase type 2, anticodon-binding domain	Interproscan
IPR002301 all species →	Family	Isoleucine-tRNA ligase	Interproscan
IPR009008 all species →	Homologous_superfamily	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	Interproscan
IPR002300 all species →	Domain	Aminoacyl-tRNA synthetase, class Ia	Interproscan
IPR013155 all species →	Domain	Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding	Interproscan
IPR009080 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42780 all species →	SOLEUCYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004822 all species →	Molecular Function	isoleucine-tRNA ligase activity	Interproscan
GO:0006428 all species →	Biological Process	isoleucyl-tRNA aminoacylation	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0002161 all species →	Molecular Function	aminoacyl-tRNA editing activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000037298.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.