Gene detail

Detailed information of ENSOFVP00000037879.1 in Cyphastrea salae

Genomic Location: not available for this species
NR annotation: RMX55555.1, hypothetical protein pdam_00001635 [Pocillopora damicornis]
Species abbreviation CSALA · all data for this species · gene families

Sequence

CDS

ENSOFVT00000041073

ATGCATTGGTTCAGAAAGGATTTAAGGCTTCATGACAATCCTTCTCTATGTGAGGCACTGGTAAATTGCAGAACATTTCATGCTGTCTACATCATTGATCCAGTGAGTGCAAGAGCAGCCAATGTTTCTGCTAATCGATGGAAATTTCTTTTGGACTGCTTAATTGATCTTGACAAGAGTCTTCGTGAATGTGGCTCAAGGCTTCATGTTATTCGTGGACAGCCAACATATGTTTTGCCCAAACTTTTTCAAGAATGGAATGTTTCCAAGCTGACTTTTGAATGTGAAACTGAGCCATTTGGGCAACGGAGAGATGTGGCTGTTGCAGTCCTTGGAGAGGAGCATGGAGTGGAAGTGATTTCCAAACCATCACATACTTTGTATGACCCAGAAAAAATTATCGAGAGTAATGGTGGGGAGGCACCTTTGGTGATTAAAacatttgaaaatgttgtcAGGCAAATGGGTCCTCCAGAAAAGCCTGTAGATGCAGTCAACAAGGAAATGTTCAAAGGATGCATTTGCCCAGTGTCCAGTGATTACAACTCAAAATTTGGTGTTCCACACCTTAATGAGCTTGGTTTTCAAGAGAGCGATGTCACCTCAGGTGATATGTGGGTTGGTGGAGAGCAGGAGGCTATCAAAAGAATGACTGAACTTGAGGAAAAGTATTCATTGAGACCTATAATACCTTTTGTCATTTTGTGTTTTCAGGTGAAGTGCCAGCCCCCACCACTGTCGCTCTACAGGCAGTTGGTTTggagagaatttttttttacacttgCCAGTCAGAATCCCAACATGGACAAAGCAGTTGACAATCCTCTTTCTCTGAACATCACTTGGGAGGATAATGAGAAGGCCCTTGAGGCATGGAAAAAGGGCTTGACAGGCTTCCCTTGGATTGATGCAATAATGCGGCAGCTGCATGCTGAAGGGTGGATTCACCATGTGGCTCGCCAAGCAATTGGATGTTTCTTGACCAGGGGATGTCTTTGGATCAGCTGGGAAGAGGGTTTCAAGctgtttgagGAGCTACAGTTGGATTCAGAGTGGAGCCTGAATGCTGGTAACTGGCTGTGGGTGTCTTGCAGTGCATTCTTTCATGGACAGATACCATGGTACTGTCCGGTTAATGTTGGCAAGAAACTTGACCCATCTGGACATTATATTCGGAGATATGTGCCAGAGCTCAAGACTATGCCCACGAAGTACATCCATGAGCCGTGGCTGGCACCCATAGCTTTACAGAAGGCAAGTAACTGCGTTATCGGTGAAGATTACCCAGAGCGTCTCTGTGACCACAAGGAGAGACGGAAGGAAAAAAAAGTGGGGCTTCATTGGTTCAGGAAAAATCTTCGGCTTCATGACAATCCTGCATTATGTGAAGCAATAAAAGGAAGCAGTGAGCTTATAGCAGTGTATATCCTTCCACCTTTCATTCCTGATGGAAATATCTCGGCAAATCGATGGAATTTCTTGATTGAATGCTTAGAGGACCTGGACAAGGGTTTGAGAAGTCTCGAATCCCAGCTACTTGTTGTGCAAGGGTATCCAGCCCAAGTTATTCCTAAACTGCTGCAGAATTTACAGGTTAACAAGCTAACTTTTGAAACTGAAAGTGAGCCATTTGGGAAACAGCGAGATGCTGTTATCACTCACTTAGCTGAAAGTGCTGGTGTGAAGGTTGTTTCATGTACCTCTCACTCCTTGTATGACATTGAGCAAGTTATCAAGGCAAATGACAACAAAGCTCCAGTATTTTTTGGCGACTTCCTTGATGTCATTTCTACCATTGGTCCACCAGAACCTCCAGTAGAATCAGTTAATAAACACATGGTTTCATCCCTGGTACATGGTGGATACAGTTTCAAGGACTGCCATATACCATTAGTTGAAGATCTTGGAATTGAAAAATCCAAGGTGACATGCAAAGGGACGTGGTGTGGGGGAGAAACAGAGGCATTGAAAAAACTTGATGCTGTTTTGCAAGAGATGGTTGACTGTGGTTTTCAAATCAAGTCTGCCCATGATGCATTTTTCCACAGTTTCCAGGACAAGTTGAGTCCTTTCCTGAGATTTGGATGCCTCTCTCCACGGACAGTTTACCATGCTCTGTCAGAAGTGTATCAAAATGTAGGTGCCAAACATTTTGCACCTCCATTGTCACTTTTTGATTCACTGCTTTGGAGAGACTTCTATTTCACCATTGGTAGCAAAAATCCCACTTTGCACCAAGTGATGAATAACCCGCTGTGCTTAGAAATCGAGTGGGAAGACAATGCCTTTGCTGTGGAACAGTGGAAAAAGGGTACAACAGGTTTCCCTTTTATTGATGCCATAATGCGGCAGCTGCATCAGGAAGgttggatttctgattttgcacGGCAAATTGTGGGCTCTTTTCTCACAAGAGGATGCCTGTGGATCTGTTGGGAGGAAGGATTTAAGGTGTTTGGAGAGCTTCAGTTAGATGCAGAGTGGAGCATAAATGCAGGAAGTTGGTTGTCACTGTCTGGAAGCACTTTTGGCCAAGACACACTACCTTTCATCTGTCCAGTAGACCTAGCAAAAAAGATTAATCCCACTGGAGAATATATCAGAAAATATGTGCCTGAAGTACAGAATTTACCCACTGAGTACTTGTTTGAACCATGGAAAGCTCCTGAATCTGTGCAACAAGCTGCTAGATGTTTGCTGGGTGAAGACTATCCTTTACCACTTGTGGACCACAAAGAGCAGAGGAGAGTTTGTGTGCAGAGGCTGAAAGAGCTGGCTCATAGCATTGGTGCTGATATTCCTGGTAAATAG

Transcript

ENSOFVT00000041073

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZZY0	Cryptochrome-1 OS=Sylvia borin OX=73324 GN=CRY1 PE=2 SV=1
Q5IZC5	Cryptochrome-1 OS=Erithacus rubecula OX=37610 GN=CRY1 PE=2 SV=2
Q16526	Cryptochrome-1 OS=Homo sapiens OX=9606 GN=CRY1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001198 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00875 all species →	DNA_photolyase	DNA photolyase	Domain	Interproscan
PF03441 all species →	FAD_binding_7	FAD binding domain of DNA photolyase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002081 all species →	Family	Cryptochrome/DNA photolyase class 1	Interproscan
IPR006050 all species →	Domain	DNA photolyase, N-terminal	Interproscan
IPR036134 all species →	Homologous_superfamily	Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily	Interproscan
IPR036155 all species →	Homologous_superfamily	Cryptochrome/photolyase, N-terminal domain superfamily	Interproscan
IPR005101 all species →	Domain	Cryptochrome/DNA photolyase, FAD-binding domain	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11455 all species →	CRYPTOCHROME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0032922 all species →	Biological Process	circadian regulation of gene expression	Interproscan
GO:0043153 all species →	Biological Process	entrainment of circadian clock by photoperiod	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOFVP00000037879.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.