Genomic Location: chr9:2433048...2436885
NR annotation: XP_020618577.1, chitinase-3-like protein 1 isoform X1 [Orbicella faveolata]
Species Cyphastrea salae · all data for this species · gene families
| CDS |
| ENSOFVT00000041080 |
| Transcript |
| ENSOFVT00000041080 |
| Protein |
| ENSOFVP00000037886.1 |
| UniProt accession | Description |
|---|---|
| Q13231 | Chitotriosidase-1 OS=Homo sapiens OX=9606 GN=CHIT1 PE=1 SV=1 |
| Q9BZP6 | Acidic mammalian chitinase OS=Homo sapiens OX=9606 GN=CHIA PE=1 SV=1 |
| Q91XA9 | Acidic mammalian chitinase OS=Mus musculus OX=10090 GN=Chia PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000816 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00704 all species → | Glyco_hydro_18 | Glycosyl hydrolases family 18 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029070 all species → | Homologous_superfamily | Chitinase insertion domain superfamily | Interproscan |
| IPR001579 all species → | Active_site | Glycosyl hydrolases family 18 (GH18) active site | Interproscan |
| IPR017853 all species → | Homologous_superfamily | Glycoside hydrolase superfamily | Interproscan |
| IPR001223 all species → | Domain | Glycoside hydrolase family 18, catalytic domain | Interproscan |
| IPR011583 all species → | Domain | Chitinase II | Interproscan |
| IPR050314 all species → | Family | Glycosyl Hydrolase Family 18 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11177 all species → | CHITINASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004553 all species → | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0008061 all species → | Molecular Function | chitin binding | Interproscan |
| GO:0004568 all species → | Molecular Function | chitinase activity | Interproscan |
| GO:0005576 all species → | Cellular Component | extracellular region | Interproscan |
| GO:0006032 all species → | Biological Process | chitin catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01183 | E3.2.1.14; chitinase | EC:3.2.1.14 | Amino sugar and nucleotide sugar metabolism | ko00520 | deepkoala |
Genes whose expression across the transcriptome samples of Cyphastrea salae tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Cyphastrea salae, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
