Gene detail

Detailed information of ENSOJPP00000004657.1 in Anthopleura xanthogrammica

Genomic Location: chr14:10792762...10796545
NR annotation: XP_031557551.1, sphingomyelin synthase-related protein 1-like [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSOJPT00000005471

AAACCGGAAGCTAAGTTGGGTGACTGTTCAAAGTCGttctgggcttcctgtggtcatTCTTAGAGAAGAGAAGTGGAGGGAGTACCTAAAATCGCTAATTACGcttaaaatcgaaaaaaaattaaggcaaGACagctttattttaaaaatcttagcGAAATCTATAACATTTAAGCAAAATCCTTTTACCTCCAGCTAGCATGGGTTACCAACTGTGCTGTGGTCTGATGCAGCGGAACCGGAAGTTGCGTAACTGTTCAAAGTCCTTTTGAAGAATTGCCAAACCACGAGAAACAATCATGGCGGAcgacaacaaaaaagaagtTCTACGTTGGACTTGTAAAGATGTTGGAATCTGGTTAAAGAAAAACGGGTTTGAATATTACATAGAACTGCTAACTATAAGACACAAAATTGACGGGAAAGCTTTACTTCTCTTGAATGAGAATGACCTTCGTTTGCCGCCaatggaaattgaaattcttggCGACTTGAAAAGACTGTGGTTTGTTATCAACCAAGTGCAAAAACAAAACGATCTGTTATCATCACAGCCTAATGGATTTATAAGGAAGGTTTATTATGACCAGGTTGATAGTCCACCTAAGATCTACAAGAAGAGAGAAGCCAATGAAGAAGAGATTCATCATGTTATTGCATCAAGTATTTCTAGTGTTTCAGAAAGATGGCGAACTTGCCTTAGCGTCTTGTACGCTTTCATGGTGTTTTGTTTGACATCGTTTGTGATGACAGTCGTCCACGATAGAGTACCCGACATGAAAAAATACCCCCCTTTACCAGACATTATTTTAGATAGCGTCCCCTTGATTCCTTGGGCATTTAAGATGTGTGAGTTCACTGGCATCGTACTTGGTTCAATGTGGATTACTGTTCTCTGTTTGCATAAACATAGAATGATACTGTTACGCCGAATGGCAGCTCTCTTTGGAACTGTCTTTCTCCTCAGATGTGTTACCATGTTTGTGACTTCTCTTAGTGTGCCAGGAGTTCATTTGGAGTGTTCTGGGAAGTTATATGGAGATACTTGGGCCAAGCTGCATCGAGCATTCCAAATAATTTTTGGTATGGGTATGTCAGTCAACGGTGTACGGACATGTGGGGACTATATGTTCAGTGGACACACAGTTGTCATTACTCTGCTCAATTTTCTAATAACAGAATataCCCCAAGGAAGTGGTATTATTTGCACACAGCTTGTTGGGTGTTGAACCTGTTTGGTATCTTCTTTATTTTGGCAGCACATGAGCATTACTCTATAGATGTACTAATTGCATTCTATATATCATCTCGGCTATTTCTGTACTACCATACCTTGGCAAACAGCCATGCTCTATCCAATAATGATCAAAGAACCAAGGCCTGGTTCCcccttttttcattctttgaaGAGCATGTCCAAGGGTGTGTCCCCAATCAATATGAATGGCCATTACCATGGCCAAAATGGTTGTTTTTAAAGTGTAACTCCAAGACACATGATAAATAGAAAACctaagttattattattagaaattAAAGCAATTATTGTAAGAATTATCTTTTGTTTGATTATTGTTAGTCCTAGTATGAGATGATTAAGGTGACTTCAAAATGTTACATCATTCAAATGAGAGTTTCTATAAATCATACTAGTCCATTAATTTTTGCGCATTTATTTGAGATAcctgtaaatatatataaatataatttaaattgtgaattaaagataaattagagacaagacatcactttagCTGTGACTccgagtttcacgcttacgcaaTCATATACCGACAGTATATAGACATACATctatatttattaaatataattcataTAGTTAATTAGTTTGTTTAAAGTGCTGTTTTCACGTTTATTAGAATCATAGATTTTTCGATCAGATATTACCGGTACCAAATAAATGATACAGTACCGCTCCTTTTGTATTATTTACACAACATTAAAACTGATGTATTTTAAATTtacttaattttaaaaatcaaaatcaataaattcaTGTAGATTGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96LT4	Sphingomyelin synthase-related protein 1 OS=Homo sapiens OX=9606 GN=SAMD8 PE=1 SV=2
Q9DA37	Sphingomyelin synthase-related protein 1 OS=Mus musculus OX=10090 GN=Samd8 PE=1 SV=1
Q20696	Sphingomyelin synthase-related 1 OS=Caenorhabditis elegans OX=6239 GN=F53B1.2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005730 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF14360 all species →	PAP2_C	PAP2 superfamily C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR045221 all species →	Family	Sphingomyelin synthase-like	Interproscan
IPR025749 all species →	Domain	Sphingomyelin synthase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21290 all species →	SPHINGOMYELIN SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016780 all species →	Molecular Function	phosphotransferase activity, for other substituted phosphate groups	Interproscan
GO:0030173 all species →	Cellular Component	obsolete integral component of Golgi membrane	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0033188 all species →	Molecular Function	sphingomyelin synthase activity	Interproscan
GO:0046513 all species →	Biological Process	ceramide biosynthetic process	Interproscan
GO:0047493 all species →	Molecular Function	ceramide cholinephosphotransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22697	SAMD8; sphingomyelin synthase-related protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Anthopleura xanthogrammica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Anthopleura xanthogrammica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →