Gene detail

Detailed information of ENSOJPP00000010280.1 in Anthopleura xanthogrammica

Genomic Location: :...
NR annotation: XP_031558319.1, splicing factor 3A subunit 1-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSOJPT00000011907

ATGCCTCCTGTTACGCTAGAAAGTGGCgagaagaaggaggaggaaTATTCAAAGCCAACAATTGGGATTATTTACCCTCCACCTGAAtATGTTGAAAAAACTAATACCAAATGGTCTTCAATTAAAGGTCCAGAGTTTGAATCCAGAATTCGACAGAATGAAATCAACAACCCCAAGTTTAACTTTCTAAATACTGGTGATCCATACAATGCATACTTCCAGCACAAAGTTAAGGATTTCAAGGAACAGCTTGGAAAAGGTGCTGAACCATCATTTGCATCATTCCAAATGCCTAGCAAGCCAAAACCACTCATGCAGCAACAAATCACCTTACCAGAACCTGCCATACCCAAGGAACCACCACCAGAATATGAGTTTATTGCTGATCCTCCAAGTATTTCAGCACTAGATCTTGATATTGTGAAACTTACAGCACAGTTTGTGGCAAGAAATGGACGCCAGTTTCTATCCAATCTCATGTCCAGAGAACAGagaAATTATCAGTTTGATTTCCTGAGACCTCAACACAGCCTTTTCAACTACTTCACCAAACTGGTTGAGCAGTATACTAAGGTGCTCATTCCTCCAGGTAACATCAAGGAAAAACTAAGGAAAGATGTGGATGATCCTCATAAGATACTTGATCGTGTAAAGTACAGAGTGGAATGGCTGAAACACCAGGAAAGGGAAAAGCAAAAACTTGAAgatgagaaagaaaaggagagaGTAGCATTTGCATCAGTTGATTGGCATGACTTTGTGGTTGTGGAAACAGTTGAGTTCAAGGAAAATGAATCAgGAAATCTTCCTCCACCAGTTACCCAAGAACAACTTGGTGCAAGAATTTTGGCACaagaaagatatcaaaaaatgaagGATGTTAATGAAGAAGCagatatgaatatggatgTTGAAATGGAAGTTGATGATCCTTCTGATGCCCCCGGTACTCTGAGACAACAGCAGATCGATATGGATGTTGAAAGTAATGAACCTCCACAGCCTCCTCGCTCAGAACCACTCATCaaacccccacccctccctccctcaaTTTCTGGATCATCAGCACAGATTCGCCGAGGCTATGATCCCAAGGCACCTAAACCAGCACCGCCACCCATGTTACCAGAGGAGtttttgatctcacctattacTGGCGAGCGTGTACCTGCATCAGCCATGGCAGAGCACATGAAGATTAACCTTCTTGATCCTAGATGGAAGGAGCAAAGAGACAGAGCTTTGAGTGAAAAGAAGACCCAAGAAGAAGTGTACGCAGAAGGTGTTGCTATTGGAAGCAGCCTGAAACAGCTTGCTGAGAGACGTACAGATATCTTTGGTGCTGGTGATGAAGAGACAGGTATCGGAAGGAAGATTggggaagaagaagaaaagaaaccagAAAAAGTCACCTGGGATGGCCATACTGGATCTATGGCTGCCACATCACGAAGGGCACAGGCAGGAATCTCTGTAGAACAACAAATTGAAGCCATTCACAAGTCAAAGGGTTTGATCCCATCTGAAGAATCTGAAAGAATCGGTCCCAAGGCACCAGAACATCCAACAATTGCAGATATCTTAAGAAACAAATCCCTTCCACCACGTCCTGATGGTGctcaaccaccaccaccaccaccgccaGGTCTATCTCCTgcatccatacctccccctcCTCCTGGAGTAACAGCAATGATGAATGCACCCCCACCCCGTCCACCCTCTATGCCaccagcaccaccaccaccaaagTTTATGagttTACCGCCACCACCACCTGGTAGTCACCCAATGCACCCTCCTCAGTTCATGAACATGCCCCCTGCACCACCCATGCGCGCCccacctccaccaccaccacaagcAAACAAGCGAGAGCACGAGGATGAAGATCCATCAGCTAAGAAGAGTAGAGTAGAAGGACCAGAAGCAAATCTTGTACCAGAAAACGAGTTCATCAAGAGCAATCCAAATCCTGTCACCTTCAAAGTGCAAATACCCAACCTGCctgaaaagaatgaatggaaacTTGATGGCAGCCCGATAACACTCACACTGCCACTTACAGACCAGATATCTGTCATCAAGGCTAAGATTCATGACGTAACAGGCATGCCAGCCGGAAAACAGAAGCTCCAGCTTGGGGGAATCTTCATCAAGGACTCCAACTCGTTGGCCTACTATAACGTCTCGCCTACAAGTGTGGTGCAGCTTCAACTTAAAGAACGTGGTGGAAGAAAGAAGTGA

Transcript

ENSOJPT00000011907

Protein

Uniprot

Gene family

Uniprot term	Description
A2VDN6	Splicing factor 3A subunit 1 OS=Bos taurus OX=9913 GN=SF3A1 PE=2 SV=1
Q15459	Splicing factor 3A subunit 1 OS=Homo sapiens OX=9606 GN=SF3A1 PE=1 SV=1
Q8K4Z5	Splicing factor 3A subunit 1 OS=Mus musculus OX=10090 GN=Sf3a1 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01805	Surp	Surp module	Family	Interproscan
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan
PF12230	PRP21_like_P	Pre-mRNA splicing factor PRP21 like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000061	Domain	SWAP/Surp	Interproscan
IPR035967	Homologous_superfamily	SWAP/Surp superfamily	Interproscan
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR045146	Family	Splicing factor 3A subunit 1	Interproscan
IPR022030	Domain	Splicing factor 3A subunit 1, conserved domain	Interproscan
IPR035563	Domain	Splicing factor 3A subunit 1, ubiquitin domain	Interproscan
IPR019956	Domain	Ubiquitin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15316	SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000381	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0005686	Cellular Component	U2 snRNP	Interproscan
GO:0045292	Biological Process	mRNA cis splicing, via spliceosome	Interproscan
GO:0071004	Cellular Component	U2-type prespliceosome	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12825	SF3A1, SAP114; splicing factor 3A subunit 1	-	Spliceosome	ko03041	deepkoala