Gene detail

Detailed information of ENSOJPP00000012900.1 in Anthopleura xanthogrammica

Genomic Location: not available for this species
NR annotation: XP_031562407.1, tripartite motif-containing protein 3-like isoform X1 [Actinia tenebrosa]
Species abbreviation AXANT · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P29341	Polyadenylate-binding protein 1 OS=Mus musculus OX=10090 GN=Pabpc1 PE=1 SV=2
Q9EPH8	Polyadenylate-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Pabpc1 PE=1 SV=1
P61286	Polyadenylate-binding protein 1 OS=Bos taurus OX=9913 GN=PABPC1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008766 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00658 all species →	PABP	Poly-adenylate binding protein, unique domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR036053 all species →	Homologous_superfamily	PABC (PABP) domain	Interproscan
IPR002004 all species →	Domain	Polyadenylate-binding protein/Hyperplastic disc protein	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46276 all species →	E3 UBIQUITIN-PROTEIN LIGASE UBR5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0034450 all species →	Molecular Function	ubiquitin-ubiquitin ligase activity	Interproscan
GO:0090263 all species →	Biological Process	positive regulation of canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOJPP00000012900.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.