Gene detail

Detailed information of ENSOJPP00000013552.1 in Anthopleura xanthogrammica

Genomic Location: chr2:4409930...4443649
NR annotation: XP_031552055.1, AP-1 complex subunit gamma-1-like isoform X1 [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSOJPT00000015603

ATGCTGGGCTACCCTGCTCATTTTGGCCAGCTAGAGTGTCTCAAGTTGATAGCATCACCCAAGTTTACTGACAAACGAATAGGGTATCTTGGCGCTATGTTGCTATTGGATGAGAGACAAGATGTTCATTTACTTGTCACAAATTCCATGAAAAATGATATGAACCATACCAACCAGTTTGTTGTTGGACTGGCACTCTGCGCACTTGGAACCATTTGTTCCCAAGAAATGAGCAGGGATTTGGCTggagaaattgaaaaacttattAAGTCTACTAATTCATATATTCGTAAAAAGGCAACATTGTGTGCTACTCGGATCATTAGGAAAGTTCCAGAATTGATTGAGATCTTTGTTCCTTCCACAAGATCATTGTTACATGAAAGAAATCATGGTGTTCTACTTACTGGTATAACCCTTGTGACATCCATGTGTACTCTGAATACAGAAACTTTATCACACTTTAAAAGGCACGTAGCCACACTAGTGAAAGTTTTGAAGAATTTGATAATGTCTGGGTATTCTCCTGAACATGATGTGTCTGGCATTAGTGATCCTTTTCTTCAGGTTCAGATTATCAGACTACTTAGAATACTTGGtaaagatgatgaagaagcCAGTGAACAGATGAATGATGTCTTGGCACAGGTTGCCACCAATACAGAAACAAGCAAAAATGTAGGCAATGCTATTCTTTATGAAACAGTGTTAACAATCATGGATATCAAGTCTGAAAGTGGCCTTAGGGTTCTAGCAATTAACATCCTCGGCAGATTCCTCTTAAATAATGACAAGAATATAAGATATGTAGCCCTTAATACTTTGCTGAAGACGGTGAATGCTGACTATAATGCTGTCCAGAGACATCGCAGTACTATTCTGGATTGTCTAAAAGACCCAGATATTTCAATTAGGCGGAGGGCTATAGAACTGTCATTTGCACTTGTTAATTCAAGCAATATCCGTGGTATGATGAAAGAACTGCTTGCATTCTTGAACAAAACAGATGTAGAATTTAAATCTTATGTGGCATCTAATATACTTACGGTGGCAGATAAACATTCCCCTAACAAGCGATGGCACATTGATACTATGATGAAAGTGCTTACTACATCTGGTAACTATGTAAGGGATGACACAGTACCAAGTTTGATTCACATGGTGTGTGCGTCCAGTGAACTCCAGGCCTACAGTGTACAAAGATTGTTCAAGGCTATGCAACATGACATCAGTCAGCAATCTCTGGTACAGATAGGCTCATGGTGTTGTGGTGAGTTTGGAGAAAAGCTGTTAGTGGACATTGAAGAGGATGAACCTCAAGGGATAACAGAAGGAGATGTGATTGATGTCCTTGAGAGCATTCTATATAGTTCCCATTCAACATCTGTTACCAGAGACTATGCCATAAATGCCGTCATGAAACTGAGCACACGGTTCACACAAGAAATAGATCGTATCAAAGCTGTGGTGAAGAATTTTGGCTGTAACATGGATGTAGAGTTACAACAGCGTGGTGTTGAATATGGTGCCTTGTTTGACAAATACAACAACATGAGGCCTGGGCTGCTGGAGAGAATGCCTGCTGTACAGCTAAACAAGATGAATGGAGATCTTGCTAATGGCGAAGTGGAACCAGACAGAAAACCAGAATTAAAACAAGtGGAAATCGAACAAAAACCTCCACAACAGAAACAAGAGTCTGATGCTCTTCTTGACCTTCTTGGTGGAGGTGAAACTATGAATGCTGTACAGCCTGAACCATTAGCTGCTCCAAAGCCACCATCATCTGGTGGAGAGCTTCTGGATCTGCTAGGGGGACTTGACATGGGACCTACTGCAGCTCCAGTTGGCCTAAACCCAATGTCTCCCATGAATCAAGCACCAAATCTCCTCACTGGTGGTGGGTTGTTATCGCCTTCTAACCCTAACCAGCCAGCAATGCAAATGAACAATGAAATGCCTCTACAGTCATCAGGGATCCCCCCATTAACAGCATATGAGAAAGGTGGTCTCAAAATCGACTTCAATTTTGAGAAGGACCCAAATAACCCGGGTCTATCAACCATTTCTGTCAATGCCGTCAACTCACTTTCAGTACCCATGTCAGACTTTGTCTTCCAGGCTGCTGTACCCAAgACATTTCAGCTTCAAATGCAAAGTCCATCAGGAAATATGATCCCACCAAACAACACTGGATCAGTAACACAAAAGATACAAATCAATAACCCACAACAGTGA

Transcript

ENSOJPT00000015603

TCTCATTCGCACTATCAGAGCAGCAAGAACAGCAGCTGACGAGAGAGCTGTAATCTCAAAGGAATGCGCTTCTATCAGAGATGCGTTCCGCGAGGAAGACAATGACTTCCGCTGTCGCAGTGTTGCCAAATTATTGTACATTCACATGCTGGGCTACCCTGCTCATTTTGGCCAGCTAGAGTGTCTCAAGTTGATAGCATCACCCAAGTTTACTGACAAACGAATAGGGTATCTTGGCGCTATGTTGCTATTGGATGAGAGACAAGATGTTCATTTACTTGTCACAAATTCCATGAAAAATGATATGAACCATACCAACCAGTTTGTTGTTGGACTGGCACTCTGCGCACTTGGAACCATTTGTTCCCAAGAAATGAGCAGGGATTTGGCTggagaaattgaaaaacttattAAGTCTACTAATTCATATATTCGTAAAAAGGCAACATTGTGTGCTACTCGGATCATTAGGAAAGTTCCAGAATTGATTGAGATCTTTGTTCCTTCCACAAGATCATTGTTACATGAAAGAAATCATGGTGTTCTACTTACTGGTATAACCCTTGTGACATCCATGTGTACTCTGAATACAGAAACTTTATCACACTTTAAAAGGCACGTAGCCACACTAGTGAAAGTTTTGAAGAATTTGATAATGTCTGGGTATTCTCCTGAACATGATGTGTCTGGCATTAGTGATCCTTTTCTTCAGGTTCAGATTATCAGACTACTTAGAATACTTGGtaaagatgatgaagaagcCAGTGAACAGATGAATGATGTCTTGGCACAGGTTGCCACCAATACAGAAACAAGCAAAAATGTAGGCAATGCTATTCTTTATGAAACAGTGTTAACAATCATGGATATCAAGTCTGAAAGTGGCCTTAGGGTTCTAGCAATTAACATCCTCGGCAGATTCCTCTTAAATAATGACAAGAATATAAGATATGTAGCCCTTAATACTTTGCTGAAGACGGTGAATGCTGACTATAATGCTGTCCAGAGACATCGCAGTACTATTCTGGATTGTCTAAAAGACCCAGATATTTCAATTAGGCGGAGGGCTATAGAACTGTCATTTGCACTTGTTAATTCAAGCAATATCCGTGGTATGATGAAAGAACTGCTTGCATTCTTGAACAAAACAGATGTAGAATTTAAATCTTATGTGGCATCTAATATACTTACGGTGGCAGATAAACATTCCCCTAACAAGCGATGGCACATTGATACTATGATGAAAGTGCTTACTACATCTGGTAACTATGTAAGGGATGACACAGTACCAAGTTTGATTCACATGGTGTGTGCGTCCAGTGAACTCCAGGCCTACAGTGTACAAAGATTGTTCAAGGCTATGCAACATGACATCAGTCAGCAATCTCTGGTACAGATAGGCTCATGGTGTTGTGGTGAGTTTGGAGAAAAGCTGTTAGTGGACATTGAAGAGGATGAACCTCAAGGGATAACAGAAGGAGATGTGATTGATGTCCTTGAGAGCATTCTATATAGTTCCCATTCAACATCTGTTACCAGAGACTATGCCATAAATGCCGTCATGAAACTGAGCACACGGTTCACACAAGAAATAGATCGTATCAAAGCTGTGGTGAAGAATTTTGGCTGTAACATGGATGTAGAGTTACAACAGCGTGGTGTTGAATATGGTGCCTTGTTTGACAAATACAACAACATGAGGCCTGGGCTGCTGGAGAGAATGCCTGCTGTACAGCTAAACAAGATGAATGGAGATCTTGCTAATGGCGAAGTGGAACCAGACAGAAAACCAGAATTAAAACAAGtGGAAATCGAACAAAAACCTCCACAACAGAAACAAGAGTCTGATGCTCTTCTTGACCTTCTTGGTGGAGGTGAAACTATGAATGCTGTACAGCCTGAACCATTAGCTGCTCCAAAGCCACCATCATCTGGTGGAGAGCTTCTGGATCTGCTAGGGGGACTTGACATGGGACCTACTGCAGCTCCAGTTGGCCTAAACCCAATGTCTCCCATGAATCAAGCACCAAATCTCCTCACTGGTGGTGGGTTGTTATCGCCTTCTAACCCTAACCAGCCAGCAATGCAAATGAACAATGAAATGCCTCTACAGTCATCAGGGATCCCCCCATTAACAGCATATGAGAAAGGTGGTCTCAAAATCGACTTCAATTTTGAGAAGGACCCAAATAACCCGGGTCTATCAACCATTTCTGTCAATGCCGTCAACTCACTTTCAGTACCCATGTCAGACTTTGTCTTCCAGGCTGCTGTACCCAAgACATTTCAGCTTCAAATGCAAAGTCCATCAGGAAATATGATCCCACCAAACAACACTGGATCAGTAACACAAAAGATACAAATCAATAACCCACAACAGTGAGAATGGCTAACTCGACTGCTACCAAGATGCCATGTTCTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43747	AP-1 complex subunit gamma-1 OS=Homo sapiens OX=9606 GN=AP1G1 PE=1 SV=5
Q5R5M2	AP-1 complex subunit gamma-1 OS=Pongo abelii OX=9601 GN=AP1G1 PE=2 SV=1
P22892	AP-1 complex subunit gamma-1 OS=Mus musculus OX=10090 GN=Ap1g1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004466 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02883 all species →	Alpha_adaptinC2	Adaptin C-terminal domain	Domain	Interproscan
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008152 all species →	Domain	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Interproscan
IPR017107 all species →	Family	Adaptor protein complex AP-1, gamma subunit	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR050840 all species →	Family	Adaptor Complexes Large Subunit	Interproscan
IPR013041 all species →	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR008153 all species →	Domain	Gamma-adaptin ear (GAE) domain	Interproscan
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22780 all species →	ADAPTIN, ALPHA/GAMMA/EPSILON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0030121 all species →	Cellular Component	AP-1 adaptor complex	Interproscan
GO:0006896 all species →	Biological Process	Golgi to vacuole transport	Interproscan
GO:0035615 all species →	Molecular Function	clathrin adaptor activity	Interproscan
GO:0140312 all species →	Molecular Function	cargo adaptor activity	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12391	AP1G1; AP-1 complex subunit gamma-1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Anthopleura xanthogrammica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Anthopleura xanthogrammica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →