Gene detail

Detailed information of ENSOJPP00000015579.1 in Anthopleura xanthogrammica

Genomic Location: chr11:12971869...12982231
NR annotation: XP_031562134.1, kinesin-associated protein 3-like [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSOJPT00000018125

AGAATGCAAGCTAATGAAGCAAGGTTCCTGAAAAGaaGAGTAAAAGGTGGCTCTGTTGATGTTCACCCGACGGAAAATGCAATTGTGGTTAATTATGAAGTCGAAGCACTCATTCTTGGAGAGATGGGAGAACCGATGGTTGGCGAAAGGAAGGAATGCCAAAAAGTGATTCGGCTCAAAAGCCTGAATGATACCACAAACGTTGGTGCTCTGGCAAAAGAGATAATTGAGAAATGCAAACTTATTCACCCAACCAAGTTACCTGAAGTTGAACAGCTTTTGTATTATCTACAGAACAGGAAGAATAGCACCAAAAATAAAGGTACATCaaggaaaaagtggtgggTCTATGCATTAATATATTGTGCACAGATTGATGAGGTAGCCAATATCAATGACATTGATGACTACATTGAGCTTCTCTATGAAGACATCCCAGAAAAAGTCAGAGGCACTGCACTGATATTACAGATATCAAGAAATCCAGATAATCTTGAGGAAATTGCTCAAAATGAGACTGTGCTTGGAGCATTGTCCAGAGTTTTACGTGAAGACTGGAAGAAGAGCACAGAACTTACTACCAACATTGTTTATGTTTTCTTCTGCTTCTCAAGTTTTTCTCAATTCCATTCAATAATCATACACTACAAAGTGGGTGCCATGTGTATGCAAATTATGGAAAGTGAAATTGCTCGTTATACCTCTTGGACCGAGGaactggagaagaagaaaacaaatatcCTTTATtatgaaaaaagctacaaaaagtTCCTGGGTCTTGTTAAAAAGCAGGAGCAGCTTCTGAGAGTTATCATTTATTTGCTGCTGAATTTGGCAGAGGATGCAAAAgtagaaatgaaaatgaaaaataagaagaTTGTCACAATGTTGGTGCAGTTACTGGAAAGACAAAATACTGATCTCCTCATCATGGTTGTCTCATTCCTTAAAAAACTTagtatttttgctgaaaacaaAGATGAAATGGCTGAGTCAAACGTCATTGAAAGAATCAATAATTTGATACCAAATGCAAATGAgGATTTGCTGAACATCACCTTACGATTGCTGCTTAATTTATCCTTTGATTCTCGTCTAAGAGACAAAGCTGTCAAAGTAGGGCTGGTTCCCAAACTAGTTCACCTCATAACCAATGATATTCACAGTGTGGTGGTTTTGTGCATCTTGTATCATATCAGCATGGATGATAGATTCAAGTCTATCTTTACCTATACAGACTGCATACCTACGGTTATGAAAATGATGTTAGAGAGCCCTGGAGAAAACATTGAACTTGAACTTATTTCGTTATGTATTAATCTTGCTGCCAATAAAAGGAATGCTCAGTTGATCTGCGAGGGCCCAGGGCTCAAGCTACTCCTAAAAAGAGCTTTTAAATTTCAAGATGCACTTCTTCTGaaaatgataagaaatatttcacaacaTGATGGCTCAACAAAAGAACAATTCATTGACTTCATCGGTGATTTGGCCAATGCAGTTTTGAAATGTCAAGATGAGGAGTTTGTGGTGGAGGCCTTAGGCATTTTAGGAAACTTGACAATATATAACTTAGAATTCAAGCAACTACTGGTGGATTACGGAATGTTGGCATTCATTAAAAACAAGCTTCAACCAGGTGCTGCAGAAGATGACATCATCTTGGAAACAATCATCTTAATTGGTACTGTCTCCATGGATGATGAATGTGCTGCTATTCTCGCTAAGGAAGGGATTATACAGACATTAATAGAACTGCTTAACGCAAAACAAGAAGATGATGAGGTGGTTCTACAGATTGTCTACGTCTTCTATCAGATGATCTTTCATAAAGCTACTCGTGATGTCATCATCAAAGAAACTCAGGCTCCTGCTTACCTTATCGACCTGATGCATGACAAAAACACTGAAATACGTAAAGTTTGTGATCAGACTCTGGATATCATCATGGAATACGATGAGGACTGGGCCAAGAAGATTCAAGCCGAAAAGTTTCGGTGGCACAACTCTCAGTGGTTGGAGATGATAGAGAACCGTGCAcagatggatgatgatgaagggTTCATGTACGGCGGTGATGAAGCGCCATATCTTGATGGTGATCTTCTAGACAGACAAGAGTTGTTTTATGGCCACCCAGGCTATGATGACCCAGTCACGCTCATGTCCCGTGAAGGGGCAGTCAGCCCTGATTTTATCGGTGGAGAACAAGGTGATTACCTAATGTATGAAGATCAAAGATATGAAGGACCCAATGGCCCCCCTGTCAGTCCATATCCTGATAGACGAATGATGAATCCCTACATGCAAGTACAGTACCCAGGACAAGAATATCCTGGTGCGAATAATGGCTACCCAGGGCAAGATGAGGGAATCGAGGACTGGGAAAGACTAATAGGAGAACAATCATCTGATCAGTATCACCCAATGCAAGACCAGATAGTCAGACCTGTCAGTCGGTATAGTGGGCGTCCTGTGTCACCTCGCTATGCAGGGGATCCATACGAAGCAGAGGAGACAGACATGTATGGTAGACCTGTATCCAGGGGATCTCGGGGTGGTTATGGCTATAGGTAA

Transcript

ENSOJPT00000018125

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q26626	Kinesin-associated protein 3 OS=Strongylocentrotus purpuratus OX=7668 GN=KAP115 PE=1 SV=1
Q92845	Kinesin-associated protein 3 OS=Homo sapiens OX=9606 GN=KIFAP3 PE=1 SV=2
P70188	Kinesin-associated protein 3 OS=Mus musculus OX=10090 GN=Kifap3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004797 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05804 all species →	KAP	Kinesin-associated protein (KAP)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR008658 all species →	Family	Kinesin-associated protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15605 all species →	KINESIN-ASSOCIATED PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005871 all species →	Cellular Component	kinesin complex	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0016939 all species →	Cellular Component	kinesin II complex	Interproscan
GO:0019894 all species →	Molecular Function	kinesin binding	Interproscan
GO:0035869 all species →	Cellular Component	ciliary transition zone	Interproscan
GO:0044782 all species →	Biological Process	cilium organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25388	KIFAP3, KAP3; kinesin-associated protein 3	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Anthopleura xanthogrammica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Anthopleura xanthogrammica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →