Gene detail

Detailed information of ENSOJPP00000016184.1 in Anthopleura xanthogrammica

Genomic Location: chr11:9538237...9545183
NR annotation: XP_031568970.1, serine/threonine-protein kinase Kist-like isoform X1 [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSOJPT00000018782

CAATTCTTGTTGTATGTGGTCTTCAAAGGCAAAAACCTTCTATGGAATTAGAACCAGGAGACATATTAGAAGGAAGCGAGGAAAAATGGGatgttttgtgttttcttgGGAAGGGAAAATGCTGTTCAGTGTATGAAGCGAGACGAGAAGGAGAAGGTTTGTGCAAAGAGAGACGGGCTGCTCTTAAATTTTACAAGAAAGAAGATAAATATACCAGTGCAGGGATGAATGAGGCTCAGATACTTCAAAAGATTCATGCAGAAGATGACGGTACTTCTTCGTCTGGAAGGGGTTTTATAGtTAAACTACTAGATGTCTTCTCCTGTGATGGCTACCTTTGTCTTCTAAACCCTTTATTAACTAGCAGCCTCTACCACATACTCACCAAAAATGGTTGGATAAACAGCCTTCCTATGTATGTTGTCCAGAAATGTTGCAGAGATTTAGCTGGTGGACTAGAATACCTCAGACAAAAGGGCATTGTTCATGCTGATATAAAGCCTACCAACATTATGTGGGATTCTGaacatgaaatatttcaacTTGTTGACTTTGGTCTTAGTTTTACAGAGGGAAAACAGCCAGCACAGCAAATTCAAAGTCCTGAATTCCAAGCTCCAGAAGTCCAGGAATGGAATAGGAATGTCATAAAACCAGTGAAAGAGGTGCCAATGTGTAGTAGTTCATGTGATACTTGGAGTACAGCATGTGTACTCTTCCTTCTTCACACTGGTCAGTCATTATTCCAGTTTGACAGCCAGCTGTCAATCATTTGTCACGATTGTCACCAGGGCCATCCAGTAGATTGCATCCACGGTAAAAGAGTTACAAATCAGTTACTTCAACATTCATTACAAAACAAGGATATTTCTTGTAAAGAGCAGGTTGAAGCCCTGTCTGATCTCTTACTCAGGATGTTTAAATGTAGACCAGATGATAGGATCACACCGAGCGAGATCCTGGATCATTCCTTCTTGAGTCCCCAGCTCACTATAACAAATCCCAGTCTTGTTGATTTACTGTTCCTGCCAACTAGGGTGTTACAGCTGACCAATATGTTCGAAGACACAAGTGAGCTGAGCCATTCAGACGAGTACGAAGATTTCGTAGATGACATCAAGGCAGAATGCTCAAGGTTCGGTGTGGTTAAGTCTTTACGGGTACCCTGTGTTGACCATGTTTCGACCAATACTGAGCTACTGGGGAAGGTTTTTGTTGAATTTGAAAACACCCAGGACTGCGAAGAGGGCCAACGGTGTCTGACTGGAAGGATTTTCAACCAGAGGACAGTTATTACCAGTTTTTATCCTTTCAAAGAGTATAGAGAACTTGTTCATTAAATCCTTGATAAACTACGGAAATGATTGTTTACACTATGTGCGGAactttagaaaatatatattgaaaaaatgaattacgatatgaaatttatttccGTGAGGTTAAGACCATTGTCAATATTTGTGGAGCTTCCGGATGATATTTTAGAATCAAATTGGTTTAAGATTCTTGGCGAGTCTTTCATATAAAGCCTATGTGATGCCTGACACTTAATTGGGTTCCGCTTTGAGCCAATTAGAGAACGAGAAAGCTCCCACCATCCAGTCAAAATGCTTGCATAtgaaagccatttgagtgtcaAGGTTTTCAACGTTTAGCTTGCAGCATATCATTTTAGAATGACTAGAATCGGGACGGGGATGGGAAGCCTGTGGTAGCACTAACATTCAAATGGTTTTCGAtatgagccaatcagaaaagcGAAAAATTACAGTAACCATGTCAAATGCTTGAATCATgtataaaagaaatttgataGTATTGTAAGTTTTCTACCTTTCAAGTCCACATACGGCTAAAAcctaggggaggggtgggtcgAGGACAAATTGACATTTCGGGACGAAAAGATTAAAAACAGACCATAAGTCTTCACCAGGAGTCAATCTTTTCCGCCACGATGTTAAATATGTACAGTATACATAGCGTTACATTGAAAGAGTAATGTTGTGTCTAGGAATTAATGTAAAAGTCTCTCACAAGAGAATTGTGACTGATGCCccatcaaaaataaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63285	Serine/threonine-protein kinase Kist OS=Rattus norvegicus OX=10116 GN=Uhmk1 PE=1 SV=1
P97343	Serine/threonine-protein kinase Kist OS=Mus musculus OX=10090 GN=Uhmk1 PE=1 SV=3
Q8TAS1	Serine/threonine-protein kinase Kist OS=Homo sapiens OX=9606 GN=UHMK1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008968 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034372 all species →	Family	Serine/threonine-protein kinase Kist	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR009145 all species →	Family	U2 auxiliary factor small subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46962 all species →	SERINE/THREONINE-PROTEIN KINASE KIST	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0043021 all species →	Molecular Function	ribonucleoprotein complex binding	Interproscan
GO:0045948 all species →	Biological Process	positive regulation of translational initiation	Interproscan
GO:0046825 all species →	Biological Process	regulation of protein export from nucleus	Interproscan
GO:0071598 all species →	Cellular Component	neuronal ribonucleoprotein granule	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0089701 all species →	Cellular Component	U2AF complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08877	UHMK1, KIS; serine/threonine-protein kinase Kist	EC:2.7.11.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Anthopleura xanthogrammica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Anthopleura xanthogrammica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →