Gene detail

Detailed information of ENSOJPP00000016293.1 in Anthopleura xanthogrammica

Genomic Location: chr6:6733176...6747455
NR annotation: XP_031557979.1, pre-mRNA-splicing factor ISY1 homolog [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSOJPT00000018896

ACATCTtgcaaccaagatggcggatcaTAGTCAGGAGTCAGCGGTTATTTGGATGTCTCGGAAGCCTGTCGGAGACTGTCGGGAGCTTATAGTTTCAACTTCGCTTGGCCGCTAGAATGTCGGAAAATAATCGGAAAAGGCCATGACTTGGTTCCAGTTTCCTAGCGGGATTGCATATGGCGGACGTACATGAGACGTTCTTCTGAAAAACAGTTAGAAATCGTAAAAAACTGGCTCTAATCTTGTACATATTCTTAAGAAACTAGGAACAAAGTATAACTAGCGTCATTCATCAAAATGGCTCGAAACGCAGAAAAGGCGATGACCATGCTGTCTCGTTGGTATGATGTCAAACGAAAAGAGGCAGGCAAAGGCATTCAGGAGAGAAGACCATTTTTAGCTACAGAGTGTGACAGTCTTCAAGAGGCAGAACGATGGAGACACCAGGTCATAAGAGAGGTTGCAAAGAAAGTTGCACAGATACAAAATGCTGGTCTTGGAGAGTTTCGTATACGTGATCTTAATGatgaaattaataaattactgAGAGAGAAGAGACACTGGCAAGACAGAATAAAAGAACTTGGAGGTCCAGACTATGGGaaaattggTCCCAAGATGTTAGATTATGAAGGAAAAGAAGTGCCAGGGAACAGAGGATATAAATACTTTGGTGCTGCAAAAGATCTTCCTGGTGTAAGGGAATTGTTTGAACAAGAACCCCCAAAAGCACCAAGGAAGACAAGGGCAGAGTTATACAAAGATGTTGATGCTGACTACTATGGTTACagagatgaagatgatggtgtgTTGGTACCAATTGAGCAAGAAGTTGAAAAAGATGCTATAGCTAGAGCTATGGAAGAATACCAGAGACAAAAAGAGTCTGAAGAAGTaaatgaagaagatgatgatgaagaggacATCTATGCTGTACAGGCTGGTGAAGAGgaaagtGATAATGAAATGGAGACAGAAGAAGGTGCAGAAGGAGAACAGAGCTTTGTTTCTCATGTTCCTGTGCCATCACAACAAGAGgTTGAGGAAATGCTTGTTCATCGGAAGAAAATGGAACTACTAGATAAATATGCCAGTGAAGCCCTGATCCAGCAGAGTCAAGAAGCAAAAGCATTACTAGGGATTTGATAGACAGAAACTTTTATACCTGTGTTTCAACGAGACATGATAAGCGAGGAAAACATGAAGACCCACAAAAAGGATCAATGTCTAGCTCTGACTTTGCTTAACTCTATCTAAGTATATACTGTTGTTGGTAAGACATTATCTAAAAACCAGGatagaaataaagaagaaaaagtggGTCTTCTTTTTTCATGCCTCTCAAGATAGTGGCTCATGATAAAAGGGAATTAGGACTGTCCTTTGCTCATCATGAGAATTTTAACAGAAGTAAAAACAATCTCTTTTCACTTCCTTCTGAAAAGCTGCATTTGCTTTCAGTTTGTGCGCATGGTCAAGACTGAACATTAGGGGGCTTTCGTTTATTACTGTATGGGGGAGGTCTTGGTAATGTTGGGGGTCACATTATTTACAGAAGCTATATAgggggttgttactaattgtatgcagTTTTATAGGtgtttagtaataaactgggcgaaatggggggggggggttattaTATTCTTGCCATACAGGAAGGGGgggttgggtaatatttggtaaagacaaaaagacaacagatgattttgccgaccccccccccccccatatactaataaatgaaagccccttAAGGAAAGCAACTGCACCTTGTATGAGATTGCGCATCTCCGTTTGACTTGATTGGCATGACAATGAAAAatgtttgtcgttttttttcagcatcgcATATAGTTTACAGTCATCATGAAAAAGCAATTTGAGCGTAAATTTTGATATCGATAGCCATGCACATTTACTTTGGTGTTCGTGCGCGCTCAGACCTACAAGGCTCGCGTTTTCTAGTACAgtgtctatagaccccttacatgtgacgtcaaagcagctcaacttggaggacaaaacaaaagaattttaatctcctgagaattggaacctgttattttgt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q69ZQ2	Pre-mRNA-splicing factor ISY1 homolog OS=Mus musculus OX=10090 GN=Isy1 PE=1 SV=2
Q6AYB3	Pre-mRNA-splicing factor ISY1 homolog OS=Rattus norvegicus OX=10116 GN=Isy1 PE=2 SV=1
Q9ULR0	Pre-mRNA-splicing factor ISY1 homolog OS=Homo sapiens OX=9606 GN=ISY1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007253 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06246 all species →	Isy1	Isy1-like splicing family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029012 all species →	Homologous_superfamily	Helix hairpin bin domain superfamily	Interproscan
IPR009360 all species →	Family	Pre-mRNA-splicing factor Isy1	Interproscan
IPR037200 all species →	Homologous_superfamily	Pre-mRNA-splicing factor Isy1 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13021 all species →	PRE-MRNA-SPLICING FACTOR ISY1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000350 all species →	Biological Process	generation of catalytic spliceosome for second transesterification step	Interproscan
GO:0000389 all species →	Biological Process	mRNA 3'-splice site recognition	Interproscan
GO:0000974 all species →	Cellular Component	Prp19 complex	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0071014 all species →	Cellular Component	post-mRNA release spliceosomal complex	Interproscan
GO:0071020 all species →	Cellular Component	post-spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12870	ISY1; pre-mRNA-splicing factor ISY1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.