Gene detail

Detailed information of ENSOJPP00000016648.1 in Anthopleura xanthogrammica

Genomic Location: not available for this species
NR annotation: XP_031553053.1, GTPase-activating protein and VPS9 domain-containing protein 1-like [Actinia tenebrosa]
Species abbreviation AXANT · all data for this species · gene families

Sequence

CDS

Transcript

ENSOJPT00000019276

CTGCAGTCATCCCTCCTCTAACCCTTTTCATACATGCCCTTGCACCATCATCTCTGGAGAATACCTGCTAAAAGAAGATGATTTTTTCTCCATATCAATACTATCTTTTACTGTAAATATAGACTTTGATGAATTATGTAATGTTGATAAGATTGAGAACAACGTAACAGTTAATGGTAGTCTTGGTATTAGTAAATGACTGGTGTGTGTGCGTgcttgtgtgtgtgtgtgtgcgtgcGTGTGTGTGTGCAagcgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtttatAGATATCATTCAAGGTCTCATGGAcatgtgtctgtgtgtctgtttGTAGATATCATTCAAGGTCTCATGGacatgtgtgtgtgtgtgtgtctgtctgtctATATCATTCAAGATATCATTCAAGGTCTCATGGATAAGTACAAAGAAGTAGCAGCTATCAAAGCCTTAGAAGATTTCTGTGAAGAGAGGGGCGAGGAAGGAGAAAATGATGAACAAGAGGATGATGTCTGGGATGAAGCAGTTCGACTGGATGACACCAAGAAGAAGCTAAGACTTGTTCTTTGCCAAGCTGACTTTAGAAACCTCCCGTGGCTGATGTCTAAAGACCGTGTTATTTCCACCAGTACTCCCTTGACGGGCCAAAGTGAAGAGCTGATGACATTCCTCCATGTGCAACTGGCTGAGGCCATCAATCTACAGAACCGTTCTCTTGTAGCTCAGTTACATGAGACTTTACGAAGTGTTAACTATCTATCTAAAGACAGTTGTATCAAAATCTTGAGTTTGATGGAGAAGGAGTATCTAGACCGTATGCCATACCTTGCATATTTAACTCGTTCGCGGCAAGCTTTGCTGACAACACAGTGTCATTTGGAACGATTAATTGAGAGAGTACAAAAGAACGAGTTGATATGCAAGAAGTGCTTCTCTTCAAACTGCATCACATTGTTTTTGGAGGAACGGGAGAGGGAAATAAACTCGTTTATCAAAAACTTTAGAAGCACAGACGTTTGCCCTACAGTTGATGAAAAGTCCAAATATCTAGATGACTTCCTGGAAAAAATGTATACAGATCTTGAGAGAGACGAAGCTTGGTTAGgAGCCTCTGAAGATCAGATTGAGAAAGGCTGTACTGCGATAGAGCGTGACATCATGGCTCGGGTTTATAATGATGCATTTTATCCCCATGGGGGAATAGACATAGAAAGAGACAAAGCATTTACAAAACATGTTGAACAGCTACAAGGAGTGGTTGGTGTTAACCATAAAGCAATTCGAATCCCTAAGATGTACCGTAAAGAAGCACCATGGCCTTCAGCACAACAAGAACTCAAGACTATTAATGCTTACAAGACGCCCAAAGACAAACTGAAATGTGTTCAGCGGTGTTGCTTCACAATCATGAATCTACTGAACATGGCAAGTGCATCCAATTCGTGTGATCCTGCGGGTGCTGATGAGTTTGTCCCTGCATTAGTCTGCGTCCTCATCCAAGCTAATCCGCCCAGTCTTCTCTCAACCATGCAGTATGTCAGCAATTTTTATGAGCAGCGGTTACTGGGAGAGGAAGCCTGGAGCTGGATGCAACTCTGTGCTGCTATTGAATATACTAAGACTATACAAGAATGAGGTACTGGGTTCTAGATAGAGTGTAACTGATGAGAGGCCCTTTTACCAgatagaataaaatatgagAAGTCCTGGGCACTAGTTTCAATACGACTATAAAGAGGTCCTGGGTTCTAGATCCAGTACAATCCAATAGGAGTATGAGGGGTCCTGGGTTCTAGATCCAGTACAATCCAGTAGGAGTATGAGGGGTCGTGGGCTCTAGATAGAGGGTAAGTAGGAGGGGTACTGGACAGAAGCAGAAAAGAAAGATTgtatcaagaaaaataattaagctttttttcccagcactAGGATTTTTGTGTTTGTAAGGGTGTTGAAGGCAATGCCCTTAAAGCTTTTAATCTGCGACACTATCTgcattaaatctttattcgtGCAGAACGcatcataattttaaatttaatattcAAGGATAAGCGGCTGAGTGCTAAAAACATAACTAATTCAAAgggaaaagaaagtaaaactataaaaaggAATTTGCTATGGAGCCTGGAAGACTATCTAAATAACCAAGTAAGATTCCCACGTCCCCTAATTTTTACGAGATAAGACTATATAggtcaaaatatatcaatgtaTAATAGAGAttattaaaatgtattaatGTGCGATGaaagtttttaataaaataatgtaatgTATTATAACCCCTTCCTTATAAAGGAAGTAGTAAACACTCTTAACAGAGTCtcctcacccctccccctatgGAAAGCACCAAGCTCTTCATTCCTCCCCAGCAGGGGAAAGAGAGAACCTGATGATACATCTGGTATACAAACAAGGTATCACCATGGATACATGGCAGAAGTATTCAGAGGCCTTCAGGGAATAGAGCTACAATGAACTCAAACCACTGGTATAGATTCTGTATTCAAGTATTCCTGGCTGCTGTGGAGAGTTGTATTGGAGTGACTGGAGTCGTGAAACATGGACGGGATCCTTTGTATCCAGGACAAACACACGAGTAACCTCCAGGCTTAAGAAGACAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5D794	GTPase-activating protein and VPS9 domain-containing protein 1 OS=Bos taurus OX=9913 GN=GAPVD1 PE=2 SV=1
Q6PAR5	GTPase-activating protein and VPS9 domain-containing protein 1 OS=Mus musculus OX=10090 GN=Gapvd1 PE=1 SV=2
Q14C86	GTPase-activating protein and VPS9 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=GAPVD1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006034 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02204 all species →	VPS9	Vacuolar sorting protein 9 (VPS9) domain	Family	Interproscan
PF18151 all species →	DUF5601	Domain of unknown function (DUF5601)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003123 all species →	Domain	VPS9 domain	Interproscan
IPR037191 all species →	Homologous_superfamily	VPS9 domain superfamily	Interproscan
IPR045046 all species →	Family	Vacuolar protein sorting-associated protein 9-like	Interproscan
IPR041545 all species →	Domain	RABX5, catalytic core helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23101 all species →	RAB GDP/GTP EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030139 all species →	Cellular Component	endocytic vesicle	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOJPP00000016648.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.