Gene detail

Detailed information of ENSOJPP00000017632.1 in Anthopleura xanthogrammica

Genomic Location: not available for this species
NR annotation: XP_031566546.1, EGF-like domain-containing protein comC isoform X1 [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Sequence

CDS

Transcript

ENSOJPT00000020349

ATCATGGCCGATGTGTTAACGTCTACCAGTGCGCATGTAATGTGGGATGGACTGGGATTAATTGTGCTATTCCTGATTGCCCAAATGTTAGTCAGTGCTCTGGAAATGGAACATGTGTTGCGCCTAATAAATGCCAGTGTTACCCTGGTTACAGTGGAAATGGATGCCTTGATACTGCTGATTGCAATATGTTGGCTAACTGTAGTAATCACGGGGCTTGTGTAAGTGAGGACGGGAAAAATTCTTCCTGCAGGTGTTATGATGGATTTCAAGGGGTAGATTGTAGCCAGCCAACCTGCAACGAACTTAACAATTGCAGCAATCGTGGCGTTTGCAAAGAAGCAGGATTCTGTGAATGTGACATTGGTTTTAGTGGATCTGACTGCTCCAATGCTTCATGCCAAGCTTTGAATTATTGTTCagatCACGGAGAATGCATTGACTACGATTTGTGCAAATGTGAACCTTCATGGTACGGGGCTGCTTGCAGTATCCCAGACTGCACTTCAATAAGCGACTGTTCAAAACAAGGTGTTTGCTTGGCACCCAATAAATGTGAATGCTACCCAGGCTACGATGGGATCAAATGCGATAAACGGGCCACACCAAATATTTACTCTCCAGTATTTTCTTCCCAAGTTTACAATGTATCGGTGTATGAAAATGCTACCTTGGGAAGCTTCGCAGGTCAAGTCAATGCTAGTGATTTAGACCAAGGGAGAAACGGTGAAGTCATGTACTTGTTATCCAATGATGTTGGTGGCGTATTCACAGTTGAAGGAGGTTCGGGTAAAATCTTTACATCTTCGTCATTGATATATAACATATTGAAGACGGATATTGTTATTCTTGATGTCACTGCCTTCGACAATGGAAAACCAATGAAGATTGCCTCATGCaaagtatatatacaaataatcGACGTTAATGACAACTGCCCGATATTTGACCAGTCCCTCCAAACGTCGTACAATATCTCCGTTAACACAAATATTGGGGCAGTTGTTGCTAATGTCAGTGCTGTCGATAAAGACAATGGAGTCAACGGTGAAGTCAGATATCACTTGACAAATGGAAATGGGACGTTCGCAATCGATTGGTTAACAGGGGCCATACGTGTCATGTATCGCGTTCAACCTTTATCATATTACGTGGTTGTGATAGCACGTGACCAAGGCACACCTTCCTGCTCAACTTCTCTGAAGATGGTGTTAAATGGGCTAGAAAAAGAAACACCTGAACAAACGACTACAGAAGCCTCAACACTGAATGACGTTAACGCTACCACCACTGTATCTGTTACAAGCTCAGGACCACCGTACATCATACTTTCATCAACAAATAACAGTCGTCTGGAACAGGTCCTTGTTATCGCTGGGTCTTCCATCGGCGTATGTTTGCTAGCAACCATTTTTGCAATTATTattgcaaagaaaatacaattgaacaaaataaacaagGTGGTACCTAAACTAGACATGCTGGAAGGAGATAGCGAGGATTTTAAGGAGGTTCTTGACATCGAGATGAAAGTCTGGGGCAGCAGATGCACTACAACTACACCAATAGATACCAGAGGCTCAAAGTGCTAAATCTCGACATCTTTCTTACTTGTcctatataaataatttagaCGGAACATAACTTTAACTcgctttatatatatattgctaTAGCAGTAGAACATCCTTTCGTATAACCATATATAGACCATATATAGAACCCTTGCagtacgtcggaatgcagctcaatttggaggacaaaacattagGTCCCAATTCAGAGGAGACtgaaattcatttattttatccttaaaattgagctgctttgacgtcacatgaaaggagTCTATTGCCTTCTGTAGTATCTACAGTATATTTTCAAGTATTTTCAAGTACCACAGAAGAGGAAATATTAGCCAATTAAACTACTTTGTACGCGTTACTTTGTATGCATGACTACCACGGTTATCATTGTTACTTACTTCTCAACACATAACGGTTAGGGCAGTTAATCAGGAGCCTTGACTTATAAATAATGCTGTTGTTTTGATTGTTAAAAGCCAACTTTTATATTTACCAATATATATGGATTACTTCATGGTTGGTGATACATTAAGATATAAAGGGCCTTATATGATGTTCTACTAGAGAAATAAGGCGCATTAGCAACAGAATACTACGCCAATGTAACGCAATGtttgattttaaataaaaacatcACTCTATACTATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88689	Protocadherin alpha-4 OS=Mus musculus OX=10090 GN=Pcdha4 PE=1 SV=1
Q767I8	Protocadherin alpha-4 OS=Rattus norvegicus OX=10116 GN=Pcdha4 PE=2 SV=1
Q9VGG5	Cadherin-87A OS=Drosophila melanogaster OX=7227 GN=Cad87A PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000535 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028 all species →	Cadherin	Cadherin domain	Domain	Interproscan
PF07974 all species →	EGF_2	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR020894 all species →	Conserved_site	Cadherin conserved site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR050174 all species →	Family	Protocadherin/Cadherin-related Cell Adhesion	Interproscan
IPR013111 all species →	Domain	EGF-like domain, extracellular	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24028 all species →	CADHERIN-87A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOJPP00000017632.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.