Detailed information of ENSOJPP00000017937.1 in Anthopleura xanthogrammica

Genomic Location: chr11:1917613...1918305
NR annotation: XP_031555057.1, translationally-controlled tumor protein homolog [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7QCK2Translationally-controlled tumor protein homolog OS=Anopheles gambiae OX=7165 GN=Tctp PE=3 SV=2
Q1HR79Translationally-controlled tumor protein homolog OS=Aedes aegypti OX=7159 GN=Tctp PE=2 SV=1
Q5MIP6Translationally-controlled tumor protein homolog OS=Aedes albopictus OX=7160 GN=Tctp PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006750 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00838
all species →		TCTPTranslationally controlled tumour proteinDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011323
all species →		Homologous_superfamilyMss4/translationally controlled tumour-associated TCTPInterproscan
IPR011057
all species →		Homologous_superfamilyMss4-like superfamilyInterproscan
IPR018105
all species →		FamilyTranslationally controlled tumour proteinInterproscan
IPR034737
all species →		DomainTranslationally controlled tumour protein (TCTP) domainInterproscan
IPR018103
all species →		Conserved_siteTranslationally controlled tumour protein, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11991
all species →		TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSOJPP00000017937.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Anthopleura xanthogrammica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Anthopleura xanthogrammica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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