Detailed information of ENSOJPP00000020428.1 in Anthopleura xanthogrammica

Genomic Location: chr11:8217445...8219908
NR annotation: XP_031570615.1, pre-mRNA-splicing factor SYF1-like [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9HCS7Pre-mRNA-splicing factor SYF1 OS=Homo sapiens OX=9606 GN=XAB2 PE=1 SV=2
Q9DCD2Pre-mRNA-splicing factor SYF1 OS=Mus musculus OX=10090 GN=Xab2 PE=1 SV=1
Q99PK0Pre-mRNA-splicing factor SYF1 OS=Rattus norvegicus OX=10116 GN=Xab2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005181 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for ENSOJPP00000020428.1 in Anthopleura xanthogrammica.
 InterPro
InterPro termTypeDescriptionSource
IPR045075
all species →		FamilyPre-mRNA-splicing factor Syf1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11246
all species →		PRE-MRNA SPLICING FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000349
all species →		Biological Processgeneration of catalytic spliceosome for first transesterification stepInterproscan
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0000974
all species →		Cellular ComponentPrp19 complexInterproscan
GO:0071007
all species →		Cellular ComponentU2-type catalytic step 2 spliceosomeInterproscan
GO:0071014
all species →		Cellular Componentpost-mRNA release spliceosomal complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSOJPP00000020428.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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