Gene detail

Detailed information of ENSOJPP00000020479.1 in Anthopleura xanthogrammica

Genomic Location: chr6:5552756...5559358
NR annotation: XP_031558895.1, DNA repair protein complementing XP-C cells homolog [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSOJPT00000023834

ATGGTTAGAAAGCGTGTTACTAGAAGTATAGATGAGATATCAGATACTCGATCGCCCAAGAGAAAGAAGGTTGAAGATCCACGCGAATCGACTGCCAAAGCTCCGTCGAAGTCGAAACGTACTTCAAGTCCTAAAGGTACTACACCTGCAAGAAAAAGGAAACCAAAGTCAGTACAAGAAAGTGAGCAAAATGGATATGCATCTGAATCTGATGACAGTGAGGTTGAAGTTGGTGTTAAAAAGAAGCACAGGGCGTCCAATAGGACTAACGTGAAGAATACGAGgcaaaataatgaagaaaaacctgataaagtggaaaaaacaaaagggcaaaaaacaactagaaaaagtggaaagaaagaaattcacAAGGGAAATGAGGAATCATGTTTGCAAAAGACTGATGACACTACTTGTGTAGACACAGATGCAGTTACACCCAGTGACACTGAAATACCTTTACCCAAAGTCAAAGTAgaaaatttagagaaaaatcTTACGCCTGCAAATAAGCGTGCTAGAGGGAAAAATGCAAGAAATCCcaaaatggctaaaaaatcagtaaaacaATCCACAAAGGacatgaaatcaaaattgGATGATCAATATGATGCTACTAGTAAGGTCAATGAGTGGGTTAAGACAGAAAAGAATAAGGATGCTGATTCTAGTGGTGGTGAAAGTGAAGAGGACATTGACTGGGAAGACGTCCAAGAGGCTGAAGGGCACCAAAGTGTGGATTTGCATGATAACAGTAGTATAAGTTCAAGTACAGCATGCCGTTCAGCTATGACTAAAAccgaaaacaaaaatgttgaaatCAGCATACAGATTCCtggaatgaaaggaaaaaggaaaaagaaGACTGAAGATGATTTActaacaaaaattcaaaaagcaATGGCAAGATTCAAgaagcaaattcaattggaTATGCACAAGGTACACCTTGTATCACTGGTAGCATGGGGGTTTAACAGGAATGCAGTATGCAATCAACCTGTTCTCCAGGCCTACTGTCTATCATACATCCCATCACACCTTCTAACCAAGTCACACAAGAAATGGAAGTCTGAAGAACTAACAAGCCTTATAACATGGTTCAAGGAAGACTTCCCACCACTTCAGCAGTTCAGAGATGACTTGTCAAAGaaTGACATGATTCCTGTATCAAGTTACCCACAGAATATGGCCGAGATTCTTGTTATTCTTTTGAGGTCACTGGGTATCTTAACAAGATTGGCATCATCTCTTCAGCCTGTCTCAATGAAGAATTCTAAAGATGGCAAGGCAGCACCCAAGAAAGTCAATGCTTCTAAGAAAATACAAAGCCCATCAAACAGCAGTGTTAAAGAAACTCCTAGAGCTGGAAAATCAAGTAACATATTACAGTGTGAAAAGACCTTAGATGACAGTGAAGATGTCGAGAGCAAAGAGACAAATGCCATAACAAACAATGCAAATTCACCTGCATCAAGCACCAGCACCTCAGTAcaatcttcatcaccatcatcttcatgtCAGGTAAAGGTCAAAACTAGTccgtcatcattaccatcatcatcaagccAATCAAAGGTCAAATCTAGTGTTAAGAAGACATCTAAACAAAATGAGACACCtaggaaaacaaaattatccACACCTAAAgtgggaagaaaaaaagaaaaaactgaaaaagaaaaaaaagaagctgCAAGTGGCCCAAAAAGAAAGAGGCTTCGGAaacataaaaagttaaattatgCAGATAATGAGGATTCTGGAAGCGACAGTGAAGATCAAGAGAGCAGtttttctgaagaaaaaagcaaCAGTGAATCAGATGAAGAGTTTGAGAAAGAAATGAGCTACAAGGCACCAGTCAAAAAGCCTGCTCCTTCCAAAGGAAAGAAACCCAAGACCTCACCCAAATCCAAGTCTAAGAAAAGTCCATCAGTTGTAgagatgattgatgatgacgatgagtTTGAGATTACCAGTAAGCCTCGTATTTTCAGAAGACAATCATCTCAGAGCTCTAAGGAAGGCAAGAGCCCAGTCCAGATAATATCTGATGATTCAGATGAAGGGGTAACCATAAGAAAGAACAAAGCAGGAACAGATATGTGGGTTGAAGTGTACTTGCCAACCAGCAAATCATGGTGGTAA

Transcript

ENSOJPT00000023834

aaacatttagtGTACACTTGAGATCATGGTTAGAAAGCGTGTTACTAGAAGTATAGATGAGATATCAGATACTCGATCGCCCAAGAGAAAGAAGGTTGAAGATCCACGCGAATCGACTGCCAAAGCTCCGTCGAAGTCGAAACGTACTTCAAGTCCTAAAGGTACTACACCTGCAAGAAAAAGGAAACCAAAGTCAGTACAAGAAAGTGAGCAAAATGGATATGCATCTGAATCTGATGACAGTGAGGTTGAAGTTGGTGTTAAAAAGAAGCACAGGGCGTCCAATAGGACTAACGTGAAGAATACGAGgcaaaataatgaagaaaaacctgataaagtggaaaaaacaaaagggcaaaaaacaactagaaaaagtggaaagaaagaaattcacAAGGGAAATGAGGAATCATGTTTGCAAAAGACTGATGACACTACTTGTGTAGACACAGATGCAGTTACACCCAGTGACACTGAAATACCTTTACCCAAAGTCAAAGTAgaaaatttagagaaaaatcTTACGCCTGCAAATAAGCGTGCTAGAGGGAAAAATGCAAGAAATCCcaaaatggctaaaaaatcagtaaaacaATCCACAAAGGacatgaaatcaaaattgGATGATCAATATGATGCTACTAGTAAGGTCAATGAGTGGGTTAAGACAGAAAAGAATAAGGATGCTGATTCTAGTGGTGGTGAAAGTGAAGAGGACATTGACTGGGAAGACGTCCAAGAGGCTGAAGGGCACCAAAGTGTGGATTTGCATGATAACAGTAGTATAAGTTCAAGTACAGCATGCCGTTCAGCTATGACTAAAAccgaaaacaaaaatgttgaaatCAGCATACAGATTCCtggaatgaaaggaaaaaggaaaaagaaGACTGAAGATGATTTActaacaaaaattcaaaaagcaATGGCAAGATTCAAgaagcaaattcaattggaTATGCACAAGGTACACCTTGTATCACTGGTAGCATGGGGGTTTAACAGGAATGCAGTATGCAATCAACCTGTTCTCCAGGCCTACTGTCTATCATACATCCCATCACACCTTCTAACCAAGTCACACAAGAAATGGAAGTCTGAAGAACTAACAAGCCTTATAACATGGTTCAAGGAAGACTTCCCACCACTTCAGCAGTTCAGAGATGACTTGTCAAAGaaTGACATGATTCCTGTATCAAGTTACCCACAGAATATGGCCGAGATTCTTGTTATTCTTTTGAGGTCACTGGGTATCTTAACAAGATTGGCATCATCTCTTCAGCCTGTCTCAATGAAGAATTCTAAAGATGGCAAGGCAGCACCCAAGAAAGTCAATGCTTCTAAGAAAATACAAAGCCCATCAAACAGCAGTGTTAAAGAAACTCCTAGAGCTGGAAAATCAAGTAACATATTACAGTGTGAAAAGACCTTAGATGACAGTGAAGATGTCGAGAGCAAAGAGACAAATGCCATAACAAACAATGCAAATTCACCTGCATCAAGCACCAGCACCTCAGTAcaatcttcatcaccatcatcttcatgtCAGGTAAAGGTCAAAACTAGTccgtcatcattaccatcatcatcaagccAATCAAAGGTCAAATCTAGTGTTAAGAAGACATCTAAACAAAATGAGACACCtaggaaaacaaaattatccACACCTAAAgtgggaagaaaaaaagaaaaaactgaaaaagaaaaaaaagaagctgCAAGTGGCCCAAAAAGAAAGAGGCTTCGGAaacataaaaagttaaattatgCAGATAATGAGGATTCTGGAAGCGACAGTGAAGATCAAGAGAGCAGtttttctgaagaaaaaagcaaCAGTGAATCAGATGAAGAGTTTGAGAAAGAAATGAGCTACAAGGCACCAGTCAAAAAGCCTGCTCCTTCCAAAGGAAAGAAACCCAAGACCTCACCCAAATCCAAGTCTAAGAAAAGTCCATCAGTTGTAgagatgattgatgatgacgatgagtTTGAGATTACCAGTAAGCCTCGTATTTTCAGAAGACAATCATCTCAGAGCTCTAAGGAAGGCAAGAGCCCAGTCCAGATAATATCTGATGATTCAGATGAAGGGGTAACCATAAGAAAGAACAAAGCAGGAACAGATATGTGGGTTGAAGTGTACTTGCCAACCAGCAAATCATGGTGGTAAAATAGTGTTAAAGATGTTACAGAGAGGTATGCTTCAGATTGGTTATCCAAAACTAAGAAGTTCCGTATTGATGCAGAATGGTGGGAAGAAACTCTACTACCATACAAAACTAGGAAAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51612	DNA repair protein complementing XP-C cells homolog OS=Mus musculus OX=10090 GN=Xpc PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004375 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for ENSOJPP00000020479.1 in Anthopleura xanthogrammica.

InterPro

InterPro term	Type	Description	Source
IPR004583 all species →	Family	DNA repair protein Rad4	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR036985 all species →	Homologous_superfamily	Transglutaminase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12135 all species →	DNA REPAIR PROTEIN XP-C / RAD4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000111 all species →	Cellular Component	nucleotide-excision repair factor 2 complex	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0071942 all species →	Cellular Component	XPC complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOJPP00000020479.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.