Genomic Location: chr6:5552781...5564313
NR annotation: XP_031558895.1, DNA repair protein complementing XP-C cells homolog [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families
| CDS |
| ENSOJPT00000023849 |
| Transcript |
| ENSOJPT00000023849 |
| Protein |
| ENSOJPP00000020492.1 |
| UniProt accession | Description |
|---|---|
| P51612 | DNA repair protein complementing XP-C cells homolog OS=Mus musculus OX=10090 GN=Xpc PE=1 SV=2 |
| Q01831 | DNA repair protein complementing XP-C cells OS=Homo sapiens OX=9606 GN=XPC PE=1 SV=4 |
| Q24595 | DNA repair protein complementing XP-C cells homolog OS=Drosophila melanogaster OX=7227 GN=Xpc PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004375 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10405 all species → | BHD_3 | Rad4 beta-hairpin domain 3 | Domain | Interproscan |
| PF10403 all species → | BHD_1 | Rad4 beta-hairpin domain 1 | Domain | Interproscan |
| PF03835 all species → | Rad4 | Rad4 transglutaminase-like domain | Domain | Interproscan |
| PF10404 all species → | BHD_2 | Rad4 beta-hairpin domain 2 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036985 all species → | Homologous_superfamily | Transglutaminase-like superfamily | Interproscan |
| IPR018328 all species → | Domain | Rad4 beta-hairpin domain 3 | Interproscan |
| IPR018326 all species → | Domain | Rad4 beta-hairpin domain 1 | Interproscan |
| IPR018325 all species → | Domain | Rad4/PNGase transglutaminase-like fold | Interproscan |
| IPR038765 all species → | Homologous_superfamily | Papain-like cysteine peptidase superfamily | Interproscan |
| IPR018026 all species → | Family | DNA repair protein Rad4-like | Interproscan |
| IPR004583 all species → | Family | DNA repair protein Rad4 | Interproscan |
| IPR018327 all species → | Domain | Rad4 beta-hairpin domain 2 | Interproscan |
| IPR042488 all species → | Homologous_superfamily | Rad4, beta-hairpin domain 3 superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12135 all species → | DNA REPAIR PROTEIN XP-C / RAD4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0000111 all species → | Cellular Component | nucleotide-excision repair factor 2 complex | Interproscan |
| GO:0003684 all species → | Molecular Function | damaged DNA binding | Interproscan |
| GO:0003697 all species → | Molecular Function | single-stranded DNA binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006289 all species → | Biological Process | nucleotide-excision repair | Interproscan |
| GO:0006298 all species → | Biological Process | mismatch repair | Interproscan |
| GO:0071942 all species → | Cellular Component | XPC complex | Interproscan |
ENSOJPP00000020492.1.Genes whose expression across the transcriptome samples of Anthopleura xanthogrammica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Anthopleura xanthogrammica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
