Genomic Location: chr16:1359396...1368877
NR annotation: XP_031569833.1, NHP2-like protein 1 [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families
| CDS |
| ENSOJPT00000024080 |
| Transcript |
| ENSOJPT00000024080 |
| Protein |
| ENSOJPP00000020700.1 |
| UniProt accession | Description |
|---|---|
| Q6P8E9 | NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1 |
| Q5XH16 | NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1 |
| Q3B8S0 | NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008693 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01248 all species → | Ribosomal_L7Ae | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002415 all species → | Family | H/ACA ribonucleoprotein complex, subunit Nhp2-like | Interproscan |
| IPR029064 all species → | Homologous_superfamily | Ribosomal protein eL30-like superfamily | Interproscan |
| IPR004037 all species → | Conserved_site | Large ribosomal subunit protein eL8-like, conserved site | Interproscan |
| IPR004038 all species → | Domain | Ribosomal protein eL8/eL30/eS12/Gadd45 | Interproscan |
| IPR018492 all species → | Family | Ribosomal protein eL8/Nhp2 family | Interproscan |
| IPR050257 all species → | Family | Eukaryotic ribosomal RNA-processing and assembly protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23105 all species → | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0042254 all species → | Biological Process | ribosome biogenesis | Interproscan |
| GO:1990904 all species → | Cellular Component | ribonucleoprotein complex | Interproscan |
| GO:0000398 all species → | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0000470 all species → | Biological Process | maturation of LSU-rRNA | Interproscan |
| GO:0022625 all species → | Cellular Component | cytosolic large ribosomal subunit | Interproscan |
| GO:0030490 all species → | Biological Process | maturation of SSU-rRNA | Interproscan |
| GO:0031428 all species → | Cellular Component | box C/D methylation guide snoRNP complex | Interproscan |
| GO:0032040 all species → | Cellular Component | small-subunit processome | Interproscan |
| GO:0046540 all species → | Cellular Component | U4/U6 x U5 tri-snRNP complex | Interproscan |
| GO:0071011 all species → | Cellular Component | precatalytic spliceosome | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12845 | SNU13, NHP2L; U4/U6 small nuclear ribonucleoprotein SNU13 | - | Ribosome biogenesis | ko03009 | deepkoala |
Genes whose expression across the transcriptome samples of Anthopleura xanthogrammica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Anthopleura xanthogrammica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
