Gene detail

Detailed information of ENSOJPP00000021508.1 in Anthopleura xanthogrammica

Genomic Location: chr16:7300943...7318662
NR annotation: XP_031554236.1, uncharacterized protein LOC116291236 [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSOJPT00000024950

CAAGGACGTGCAGAAAGACTGACCGCACGTCAAATACGGAATTCAGATATGAAGCTACCACGACTGTAGCGGTTTTACCACACGTGTTTTCGAAATATTTTTAGGATATTAATCAAGCCCTATCTTCAGAATTCCATCGATATATCTAAAAACTCGTTTACTTCTGGATTGTAAACTGAAACGAAGAATTTCGCAAAAAAACAATTGCGCAAAATCTATCGCCTGACAGATACCTTAGCCTGTCGTGAAAAACAGCCTCAAAAATACCTACAGCGAGACTTCCAGAGGCAAAGCAATTCATGATGGCACAAGTTAAACAGCTTCAGAAACAGGTTCCTTCTAAGCCTGGTTGTGTAGGAATCCATGTGACTTTAGCTTCATATTATACTAAAATGAGAGACTTGATCAAAGCTGAAGAGTACCTTGACAATGCTCACAAGCTAGACCCAGAGAATAAAGAAATTGTCTGGATGCAAGCAAAAGTACGACGGGATAAAGATTTGCAGGAACAAACCCAAAAATTCAAGGAACTAATGCCTCCCCCAAAAGCCAAGGATCTCAAGATGAAAGAACCATTGAAGGTTGAACGTCGTCATCATTCCAACCTTGATGCAAAGGAGTTCCTGTTTAAGTATGCTGTTACTGGCACACCTGTTATAATCACAGGACTGGTGGAGCACATGACGGATGAGCCCTggacaatacaatacataaaGAAAGTAATTGGTCATAAAAATGTTCCCTTGAAAACGAGAGTAAATGAGTCAACAGAGTGGGCTAAGCTAGAACATTATGGCACCATGTCTGTGGAAAAATTTATTAACTCCCTGCATGATGATAAAAAACCAAGATGCTTGTTTGACTGGAGTCTGTCGACCTTTGCACCAGAACTGGCCAAAGAAATCACAGTCCCTAGATACTTTGCTTCAGATTTTCTGCAGAGAACTGAAAAGGACTCAATGTACCGAGACAGTTGGCCAAGCTTGTTTATTGCACCAGAAGGAATGATAACTGATCTGCATGTTGATTCGTTTGGATCCAACTTTTGGATGGCACTATTTGAAGGCAGAAAAAGATGGACATTTTTCCGAAAAGAAGATCTTCCCTGCCTTTACCCTCATTGTGACCAAGACTTTAATATTGTCTTTGATGCGAATTTTTCAAACCCAGACCTTAAAGACTTTCCTCTCCTTAGCACCATTACTCCTATCCAGTGCATCCTGGAACCAGGAGAACTCCTCTTTGTCCCACAAGGATCACCGCACTATGTCGAAACGCTTGAAGACTCGCTGGCTGTATCAGCTAACTTCATCGATCTCTCAAACTATCAGAGTGCTGTTGAGGAATTAAGGATTATGGGTATCATTGACCCACAAGCCAAGAGTTTGTACAACCAAGTGTCGAGTGACAACTTTCCCACAAAGATGTGGAGTGAACAGAAAGATTTGAAATGGGAACAGTTTAAAGAATGGCCACGGAATGAGTATGAGATGTATGATACTGACTTAGTGGACTGTCAAGAGTGCTAGTAAGCCAGTAGTAAATATACAGACTGAGAAGattatcttttatttaatTACAGCTGAACGCTCAAAATCATGACctcatttaatgtatttgcatcacttttatgcacaggcttttgtATTAAATTCACACATTTCGAGATGACTTGGCTGCTTTGACCAAACAAGGTAtgtaaaagcttgtttggcTGCAAAAAAACCTGTTCATAGAAGTATGTgaattaaatgtggtcatactttaaTTTTGTGAGTCGTGCTGAAAGAGATCTAATAATCATTCTAGTGTGTTATAACATTGAACCCAGCTTAAACAAACAGTATTTCCATGGTATGAAGAAAGTAAGCTGttaaataaactaaatatattattgatatttaaaagggaaaaaatcagTGATTTTCAGCTGGGTAAAAAAAGAGTGtcctgatttaaaaaaagaatataattcttaaatagaaaaaggagtattatattatttaaaagaaaagtaCATCTCATATTATAAATCTTAGTGTGCACATGATAAACTTATGAAAAAGTcaagcaattttattttaccagTGAGAAGAAGTTGTATAATTAGTGTGAACTAACAgccaaagtaaaacaaaagaaaacaatgaattataaaaaaaatatatgaagatGGTTCAATGTTTTCATTACTTCGTGAGCTAAGGTATCATTATCGTAATCAAATTACAGTGATTTTACTGAAACAAAGTTGAATAATTAGTGACTAACAGTCAAagtagaacaaaagaaaacaatggaattagtgtctactactataaatgtattatGGTTACTATTTTTGACAGGCCAAGTAAAATCATTCTAGCTAAGGGAGCATCCATAATTTATAGGGTACAAAGGGGTGatggggattttttttttaaataatatttttgggtTGACCCCCCTGACTCAAACATAACATATTTCTCAATGACCCCGCACCAAACTACAGACTTTTAGTAGAAAACATCTTTGTCCCCCGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B5XF11	Lysine-specific demethylase 8 OS=Salmo salar OX=8030 GN=kdm8 PE=2 SV=1
A8E534	Lysine-specific demethylase 8 OS=Danio rerio OX=7955 GN=kdm8 PE=2 SV=1
B2GUS6	Lysine-specific demethylase 8 OS=Xenopus tropicalis OX=8364 GN=kdm8 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009139 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13621 all species →	Cupin_8	Cupin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR041667 all species →	Domain	Cupin-like domain 8	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR050910 all species →	Family	JMJD6 family arginine demethylases/lysyl-hydroxylases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12480 all species →	ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016706 all species →	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan
GO:0018126 all species →	Biological Process	protein hydroxylation	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0045905 all species →	Biological Process	positive regulation of translational termination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOJPP00000021508.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Anthopleura xanthogrammica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Anthopleura xanthogrammica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →