Genomic Location: chr16:6449105...6454635
NR annotation: XP_031566940.1, uncharacterized protein LOC116301910 [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families
| CDS |
| ENSOJPT00000025417 |
| Transcript |
| ENSOJPT00000025417 |
| Protein |
| ENSOJPP00000021951.1 |
| UniProt accession | Description |
|---|---|
| Q10002 | Apurinic-apyrimidinic endonuclease OS=Caenorhabditis elegans OX=6239 GN=apn-1 PE=2 SV=2 |
| Q89YT0 | Probable endonuclease 4 OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=nfo PE=3 SV=1 |
| A6LB99 | Probable endonuclease 4 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152) OX=435591 GN=nfo PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008562 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01261 all species → | AP_endonuc_2 | Xylose isomerase-like TIM barrel | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001719 all species → | Family | AP endonuclease 2 | Interproscan |
| IPR013022 all species → | Domain | Xylose isomerase-like, TIM barrel domain | Interproscan |
| IPR036237 all species → | Homologous_superfamily | Xylose isomerase-like superfamily | Interproscan |
| IPR018246 all species → | Binding_site | AP endonuclease 2, zinc binding site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21445 all species → | ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0003906 all species → | Molecular Function | DNA-(apurinic or apyrimidinic site) endonuclease activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0006284 all species → | Biological Process | base-excision repair | Interproscan |
| GO:0008081 all species → | Molecular Function | phosphoric diester hydrolase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10771 | APEX1; AP endonuclease 1 | EC:3.1.11.2 | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Anthopleura xanthogrammica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Anthopleura xanthogrammica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
