Gene detail

Detailed information of ENSOJPP00000022775.1 in Anthopleura xanthogrammica

Genomic Location: chr7:13674112...13682844
NR annotation: XP_031574662.1, inositol-tetrakisphosphate 1-kinase-like [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSOJPT00000026303

TCCACACGACTGTCCACACATGTGGAGACAAGTTGTGAACTTCGCAAACAAACTTCCAGAAAATGACCTTAAAACTACCACTTTATGGCTGACTCCTCTCGTTCACACCTTGAGAATGAGTTCTACAACAAAGCAGCTTATTCCTTTCAGCATGGGAAGGAAGCGTGTTGGACTTTTATTGAGTCCAAAGAAGAAACGCAAGACGGTCTTTGATGCCTTCTTCGAGTTGTGTAGcgaGACTGGCATTGAACTCATCGAAATTGATCTTAATATCCCCCTGGAAGATCAAGGACCATTTGATATTATACTCCAGAAGATTACAGACTACATGGCCCAAGCTACTGATGGAGATGAACATGCTTTAAAAACTATTCAAAGTTTAGAGAACTATCTAGATTGTCACCCAGAGGTCAGAGTTCTGGATCCACTGGATTGTGTACAAAAACTCTGCAATCGCTTAGTCAGTTATCAAGTGATGAAACAATGTGAATTTTTAGAAGATGGAATTAGGACATACATGCCAAACTTTGTGAGAATAGACTCAACAgatttggatgaaaatattAGAAGGATTAGAGCAGCAAATGTTCAGTTCCCAATGGtaTGTAAACCACTCATTGGACATGGATCAGACCAGAGTCATAGGATGTCATTAATGTTCGCTGAAGATGGATTAAAAGACGTTACACCTCCCTGCGTTGTACAGCATTTTGTTAATCATAATGCAATATTGTATAAAGTGTTTGTAGCAGCAAATCATTACCATACTGTACATAGACCATCTataaaaaacttttataagaGAAAAGATGATCAACCCAAGACGATCTTTTTCAATAGCCATGATGTTTCAAAAGCTGAATCATCTTCACATTTAAGTCTGTTGGACGAAATTGACAACACAGGCAAAGCTACACCAACAGATGAAGTAATTGTAGCCAAAATAGTTAAAAAACTCCAAAAGAAACTGGGTCTTTCCATGTTTGGTATTGACATTGTTATTGAAAAGGGAACAACTAATCATGTTGTCATCGACATCAATTATTTTCCTGggtacgaAGGATCACCATCTTTTCCTGCCGACATGGTCAACTACATCAATCAAATCCTGTTCACCGATCAAAATGGTCTCTAAATACCCATACACGTGAATCACATGCAGTCAACACAACTGAACaagataagaataaattgCTAAAGATTGATACAACActattacagcgcttttcataattctgctaCCTACCAACTCCAGACGTCtagcattttggcttccatcaatcgaACTGCGACGGActgagttcattccgatcgcaATCGATtaagaaattcccatgtgaaaaCAGCTGTTTAGTCACAGGAATTTCCCTTTGGGATCTCTCGATCAGAATGAACTCGCCCAtcgtagtttgattgacaggagCCAAAGTGCCAGATATATGTTCTTTAAGTCATTAGCCCTTTGAAACATAAGCATATCCCTGGTCATTTTTTCCTAGTCTTGACTCTGACCATAAAAAATCCAAGGAATAACAATCgttacagtaaaaaaaaacattcatgCAGTCTCCAAACATTTAtcacgaaagaaaaaaggtttgaaaaaaGCTAAACTTTGGAtataattttcttaaatttcagaccatggctaaaatgttttatttaataGTTCATGGGAGGATAATTTTTACTGAGCCTTTTTAACATGTGTTTATTTACAGTGCTTTCAAATCACATTCACAAAATCATACAATTTGCCGTTGCAACAAAATAGGGTTTTAGTTGACCTCAGTCAAAATGTTTCCATAACgtttttggaaaacaaaaagttttcaaaggtagttgcctatggaatgtcattAAAGTGGCTTTATTGACGTCCACTGAAACCTACTTCATTGCAATAGCAAATTGTATGATTTTCCAGCATGATTGGGAAGTGCTGTAAGGGATTTTCATTAAAACAACTCCAAGTTAtcaattcaccattttccatacatcagttcaACGGTCAccgacaaagcattcaatcgaggctgcaaggtagtttcaaagcattattcaaatttgaaccttgcagccttgactgaatgctttgtgtttgaccagtgaactgatgtatggaaagtggtga

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F480	Inositol-tetrakisphosphate 1-kinase OS=Gallus gallus OX=9031 GN=ITPK1 PE=2 SV=1
P0C0T1	Inositol-tetrakisphosphate 1-kinase OS=Bos taurus OX=9913 GN=ITPK1 PE=1 SV=1
Q7ZU91	Inositol-tetrakisphosphate 1-kinase OS=Danio rerio OX=7955 GN=itpk1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002818 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17927 all species →	Ins134_P3_kin_N	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain	Domain	Interproscan
PF05770 all species →	Ins134_P3_kin	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008656 all species →	Family	Inositol-tetrakisphosphate 1-kinase	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR041429 all species →	Domain	Inositol-tetrakisphosphate 1-kinase, N-terminal	Interproscan
IPR040464 all species →	Domain	Inositol 1,3,4-trisphosphate 5/6-kinase, ATP-grasp domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14217 all species →	INOSITOL-TETRAKISPHOSPHATE 1-KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0032957 all species →	Biological Process	inositol trisphosphate metabolic process	Interproscan
GO:0047325 all species →	Molecular Function	inositol-3,4,5,6-tetrakisphosphate 1-kinase activity	Interproscan
GO:0052725 all species →	Molecular Function	inositol-1,3,4-trisphosphate 6-kinase activity	Interproscan
GO:0052726 all species →	Molecular Function	inositol-1,3,4-trisphosphate 5-kinase activity	Interproscan
GO:0052746 all species →	Biological Process	obsolete inositol phosphorylation	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00913	ITPK1; inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase	EC:2.7.1.159 EC:2.7.1.134	Phosphatidylinositol signaling system	ko04070	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Anthopleura xanthogrammica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Anthopleura xanthogrammica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →