Genomic Location: chr12:5108602...5112112
NR annotation: XP_031551957.1, probable 39S ribosomal protein L24, mitochondrial [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families
| CDS |
| ENSOJPT00000026933 |
| Transcript |
| ENSOJPT00000026933 |
| Protein |
| ENSOJPP00000023392.1 |
| UniProt accession | Description |
|---|---|
| Q6GPM4 | Large ribosomal subunit protein uL24m OS=Xenopus laevis OX=8355 GN=mrpl24 PE=2 SV=1 |
| Q6DH02 | Large ribosomal subunit protein uL24m OS=Danio rerio OX=7955 GN=mrpl24 PE=2 SV=1 |
| Q3SYS0 | Large ribosomal subunit protein uL24m OS=Bos taurus OX=9913 GN=MRPL24 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006439 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17136 all species → | ribosomal_L24 | Ribosomal proteins 50S L24/mitochondrial 39S L24 | Family | Interproscan |
| PF00467 all species → | KOW | KOW motif | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003256 all species → | Family | Large ribosomal subunit protein uL24 | Interproscan |
| IPR005824 all species → | Domain | KOW | Interproscan |
| IPR014722 all species → | Homologous_superfamily | Large ribosomal subunit protein uL2, domain 2 | Interproscan |
| IPR008991 all species → | Homologous_superfamily | Translation protein SH3-like domain superfamily | Interproscan |
| IPR041988 all species → | Domain | Large ribosomal subunit protein uL24, KOW domain | Interproscan |
| IPR005825 all species → | Conserved_site | Large ribosomal subunit protein uL24, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12903 all species → | MITOCHONDRIAL RIBOSOMAL PROTEIN L24 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02895 | RP-L24, MRPL24, rplX; large subunit ribosomal protein L24 | - | Ribosome | ko03011 | deepkoala |
Genes whose expression across the transcriptome samples of Anthopleura xanthogrammica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Anthopleura xanthogrammica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
