Gene detail

Detailed information of ENSOJPP00000023435.1 in Anthopleura xanthogrammica

Genomic Location: not available for this species
NR annotation: BAF56223.1, Pax-D2 [Anthopleura japonica]
Species Anthopleura xanthogrammica · all data for this species · gene families

Sequence

CDS

Transcript

ENSOJPT00000026976

GCTTAGTGCTCTTCAGTAATTGTCTattaacaaacaacaaactttATGACTAATTTTCATCGTCAGCGTAACTAGTAAAAGAATATCGTGACCACAGCCTGACTAAATTATCTGGATGGATAACTACGCATGCCCCCTACCTAAGTTACGTAAATTAAACCGGCCCACGGGCCTTGGACTTGGTGATGCTTTTCATTGTGTTCCCGTCGCTCGAGCTCAACAGATTCATATTTGGCTCAAATCGTTAAAGAAATAAGAACGGCAAAAAATCAAGGGTTTTGCAGCTGGAAATTTAAAGGATGAATGAAACAACGATTAATGCAATTATATCAAAGTCCATTTCAGGCAACCGTGTTAATCAACTTGGAGGAAGCTACAGGAACGGGAAGCCGCTATCTCACGAAATGCGCCGAAAAGTTATCGAGCTATCTTTAAGCGGAGTCCGTCCTTGTGAAATAAGTCGTAAGCTGAAAATCACCCATGGATGTATCAGTAAACTGCTATCAAAGTTTTTCAAGACAGGTTCTCTTGTGCCAGGGCACGGCACGGCGGGTAGACCCCGAGTAATTACACCATGGATTGAAATGCACATCGATAGGTATCGAAAAGAACAGCCGGGGATATTTTCCTGGGAGATTCGAGAGCGATTGCTCAGAGAGAACGTCTGTTTTGAGACCTCCCTTCCCTCGCTCAGCTCAATCAACCGACTTGTGAAAAGCAAGATTAAGCAGCATTCCACTGAAcgggaagaaaagaaaacgaacaGTGAAAAGGATAGTAATCATAATATGAATCGTGAAACAAAGACGAATTCCGATTATTCCATCGATAATATTCTCAATAGCAACGATGCTAACAGGACATCAGAAGCTACCATAACTTATCACCCAGTACAAGTGATACGTTCAACTAGCTATGAAAGTCAAAGGACCGAAGAGGAATACTCTAGTGATTCCTACGaagAATGGAAAACAGTGTTGCCTTTTGAAGAGTCTGAAGATGACAAAAACATGTTCCATCCATCTGAAAGTCCCTTACGGAGGCAGCGCATAAGGTTTTCAAGATACCAGATGAAATGTCTGGAGAAGGAATTCGAGTTGAATCCATACCCGTCACACGAAGAACGAGAAAATATATCCAAAGCCCTTGATGTGGACGAAGCCAAAGTTAGGGTTTGGTTTTCTAACCGAAGAGCAAAGGTCAAGAGAAGAGTATCATCACCAATCCACTCGCATCATTCACTGCCATATCCATCATCCACAGACAATAAGTGTTATTACCCTTGTACATGCAACCATATCAATGAACCCGCTATTTTTCCACTTCAGATAAGCGCTGGCCCTTCAAGGCTGTTCTTTCCACTAGGGTACCGCCCTTTACATTAGCATTCGTAAAGTCCATCACAAAATAAGTTAAGCCTGCTAGGTCGTACATAAAAGCTTTTGAAATGCATATCTTAAAATTACTACCACTCCACCACAATTTAAGATtctctggatccgcccttgctaTGGGTGGCAACAAAGGACCGGAAACATTTTGCAACTGTTGCGCGCAACAACGTACGTATCAACGAGCTGAGACTTTAACGTGTGACGTCAATAGTATGACAAAACGAccggtccaaaacgaaaagcagttctataaatagctcttattaaccgagttcgaggtccgtaccgtaagttatggaccgagttttttccactgccttaTGGCCCAAGCGCGTAGAAAAGAGTGGATAAAACgaggatccataacttacggtacggaccgagcaaacgaggttaataagatatttataatACAGCAAGGCTAGGaaagacaattttgatttggTAGCGCGTGAAATTACCTTACCATAAAATAAAGGTTTGTGAATGCAGTCACAGATGATACATACGTTAAACATCCTTTCAAAACTACTTCACTtgtacacgcatcaagcattccgcgctactgctctaagcgcatgctcaggggattaaaaagtgagatagtattttgtaaaacatgttatattttagttgtatttttcttgtcaaacacaattttcattaaatattcaagatcacgtaccgttaagcgaattttgagtcaaatataccaaaaaatggcatattttacaaaatattatcacactttttaatcccctgagcatgcgcttagagcagtagcgcggaatgcttgatgcgtgtatacaactatttcaaaaaaagttgaagggGCGAACGGCAAATGGCGATCGATGACTGGCGCTTGCACGACCGAAAGGAACTGTGGGGTataataagaatttcttcatatgCTTGCACCATCCAGCGAAGACCTTAGATGGCAGTCTATGGCGATCGATGAATGGCGCTTGCACGACCGAAAGGAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1LZF1	Paired box protein Pax-6 OS=Bos taurus OX=9913 GN=PAX6 PE=2 SV=1
P26367	Paired box protein Pax-6 OS=Homo sapiens OX=9606 GN=PAX6 PE=1 SV=2
P63015	Paired box protein Pax-6 OS=Mus musculus OX=10090 GN=Pax6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000410 (this species only)
Transcription factor family	PAX · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00292 all species →	PAX	'Paired box' domain	Domain	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043565 all species →	Family	PAX family	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR001523 all species →	Domain	Paired domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45636 all species →	PAIRED BOX PROTEIN PAX-6-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08031	PAX6; paired box protein 6	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.