Gene detail

Detailed information of ENSOJPP00000023545.1 in Anthopleura xanthogrammica

Genomic Location: not available for this species
NR annotation: XP_031568600.1, general transcription factor 3C polypeptide 4-like [Actinia tenebrosa]
Species abbreviation AXANT · all data for this species · gene families

Sequence

CDS

ENSOJPT00000027101

TATAAGTTAacattattattttcagaaGAAGTAGTGAAGTCCAgcttaaaatatcatttatcCTGCATCCAAGCTCATCAGGAATGTTTCATGATAGAAGCAGGAGATGTTAATAATTATGACTTATGTAGAACAGCATGTACAAACTTAGCTGTTAACCGGCTACTAGATCCTATTGCTAATCCATCCAGAACATCTGGGGTGAATTTGACATCATACAGGTCTGTTGCATGGTCACCTACTGGCTGCAACAACTATGGAAGGTGTATTATGGCAACTTTGTGCTTGGACCACAGGCTCAGTATTTACACAACCAATAAAATAGACAAGGACTGGAAAGAAATTTCCTGCATATCTGACAAATGGCACAATCAATGTAAAACACTACTTGGTTCTGATCCAAAATTTAACaagttaaagaaaagaaaagattgtCCAAAGAGTAAGATCCCTGTAGGAGAGTTAATAACCAAATCTGAGCTTGAAATGGTTTATATCAATGCTGTTGTGTTAACATGTCTTGATTGGTGTCCTGTTTTGGTCACTAGTCAAAATCAAAAGTATGCATTACTTACTGCCATGACTAAAAGTGGCACAATCACTTTCTGGAAATGTTGTGTACCCTGTTTGGCAGGTGATACAGCTAATGTTCAGCTTATTGACAGTGATATTCAGACTGGTGTGTCACTGCCATGTTCTGTTGCCTGGTATAGCAGGGATGGCTCTGAAGGTTTGCTAGCTATTGGTGGGTGTGATGGACAGATAGAAGTCTTGGCTCTCAAGATATCACAAGACTCAGAATCCAATTTGACAATTGACATTCCATCCAAACACATGTTATGGAATGATTGTGATGATCTTGCTGTGAACAGCTTACAGTGGATATACACTAGTAAGGACCAAAGCTCATTTGCAACTCTGTCGGCAAGCAAAGGTTCTGCTGTTGTACAGTTCTCAGTTCCATTATCAGATGAGGAAAAGCTCAAGGAGTCAGAACATCACATTCATGATGGGATACATTCATCATTTGTGACTGGATTGGATGTTTGTCAAGATGGAAGGGTGTTCACATGTGATTCAGATGGTGTGCTACAGATGATTGATGTGATTACACATGGACAATATAGCCCTTCATACACTTGTAATGGAATTGCTATCTCCCCTAATGGACTGTACATCGCACTACTCTACACTCCGAACATAACTCGTTTGCAAGTGCataaaggaaagaataaacaAGTAGAGaTCATCATTTTATCGATATTTTCAGAGGAGTTTCTTTCTAACATCATTACACGATCCTCTATTGGTTCATTATGGGATGTTCAGACGGCAATCTGTCAGCATTACAGTCTAAATGACGCTCTCAAAAAAGGACCTTTGTTAGAGTTCTTGAATCAATCATTGGACAGTGTacctcttctttctctttatGTGCGACGTCGCTTAGTGGATCAGTTATCAAAGAATTTGGAATCTGATAGCTTTAATCAAGAAGATGTTGATGCAGAATGCATTACTGGTCAAGACTGGAAGCTGGATAGCATACAAATAGGACGACAGATTGTCAAGAATTGCTTAATGTCATCATTGAAATCGTGGCTAAAAGACCATAAAGAAGAATcCTTGACATCATCATTAATAATGAGTGATTGGTTGGTAATGAACTACAGTGATCTAGACTCGCTTGATCTGGCAGTACAAATCTATAACACCACAGGATATAGTAAAAGTGCAGCACAGGCAACGTGCATACGAGAGGAAAGGTCAGGAGAAAACGAGAATGGCTTGATGGATCCTCTGAAACAGGAAAGAGTTGAGAAGCAAGACCCTGCTGTTATTGACTTAACACAAAATGCACAACACAAGTCTTCAAATAAATTACCGTCTAGAGAGAAATGTAAAATATGTCAAAAAGACATACCCTTGACAAGTCTGATCAGCGGTGAATGCGAAAACGGTCATGCGTGGAAGCGTTGCCTCGTTACATTCTGCGTCTGCGCAGACTACTTTTATAACCGTTGCCAAGACTGCGGTGGTTGCATTTCTTCAATTGGTCAAGAACAATCGCCATGGTTACAGAAACTTTTCCGTGAGACGCAGTTCTGTTCTTTGTGTCATGGGTGGAAAGATTCACGCGTATGA

Transcript

ENSOJPT00000027101

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UKN8	General transcription factor 3C polypeptide 4 OS=Homo sapiens OX=9606 GN=GTF3C4 PE=1 SV=2
Q8BMQ2	General transcription factor 3C polypeptide 4 OS=Mus musculus OX=10090 GN=Gtf3c4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005336 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12660 all species →	zf-TFIIIC	Putative zinc-finger of transcription factor IIIC complex	Domain	Interproscan
PF12657 all species →	TFIIIC_delta	Transcription factor IIIC subunit delta bet-propeller domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024764 all species →	Domain	Transcription factor IIIC, putative zinc-finger	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR044230 all species →	Family	General transcription factor 3C polypeptide 4	Interproscan
IPR024761 all species →	Domain	Transcription factor IIIC, 90kDa subunit, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15496 all species →	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000127 all species →	Cellular Component	transcription factor TFIIIC complex	Interproscan
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0006384 all species →	Biological Process	transcription initiation at RNA polymerase III promoter	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSOJPP00000023545.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.