Gene detail

Detailed information of ENSOJPP00000024321.1 in Anthopleura xanthogrammica

Genomic Location: chr16:10080392...10087592
NR annotation: XP_031569595.1, nuclear distribution protein nudE-like 1 isoform X1 [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSOJPT00000028022

TCCCGCATGACGTCATCAAGGGACGGTTTACATTTTGATGTGTCGGCTTTGGACTACGCTGTTTCGAAACTAAGTCTTTATCGATGGGAAAAACCAGTGTTTTCGATACTAAATTTGTCAGTTAacggaaaaagaaatatttatttgactAGTGGTTGAATGAAAGACTGTGTTGGGCTTCATAGTTGACCATATGCGACAATTGGGAATGAGTAATGCGAGCGACAAGGACTTGGAGTTCGCTGATCCTAAAGAAGAGGCTGCGTACTGGAAAAGGCTTGCTCAAGAATATGAACAAAAGTGGTTAGAAGCGAGAGAAGAGCTCGATGAATTTCAGGAAGGCAGTCGAGAACTGGAAGCCGAGCTCGAAGCACAGTTAGAGCAGGCTGAGGCTCGACAACGTGAATTATTAGCAGCAAAAGCTCGACTAGAAGCTGAAAATGAAAGTATGAAGGAAAAACTCGAAGCTGGCCAGAATGAGGCTTATTTAACAGTTACTGCTTTACAAGACGAGACTGCTCAGCTAAGAGCAGTGAAAGAAGAACTACAGAAATATGTTCGCGAACTCGAACAAGCAAATGACGATCTAGAACGAGCAAAAAGAGCAACTGTTTGTTCATTAGAAGATTTTGAACATCGGCTTAACCAAGCAATAGAAAGAAATGCAATATTGGAAAATGAACTAGATGAAAAAGAGACTTTACAAGAAACTGTACAGAGATTGAAAGATGAAGCTAGAGATCTGAGACAAGAACTTCATGTGCGAcaattagaaaagaaaaaaccagAAGAATTcggtaataaagaaaataaagaaccAGAAAAACATACTACACCAGTTAAGAAAGAAGCTGTGATAGAAGCTACTTCGAATATGGTCACACATAATATTGGTACTTCACCTCTTCATACGGCATATGGAAGTTCACCTCTAACTCCGTCTGCTAGGATATCTGCACTCAATATTGTTGGAGATTTATTAAGAAAAGTAGGGGCATTGGAATCTAAGCTTGCATCATGTAGAAACTTTGTTAAAGAACAACCACATGCAATGAGAGGGTCTACAGGATCCAACAGTCCTGCTGATTCACCAAGGACCAGTAGAGTAGCAAGAGGTAATTATGGAAGTCCGACAATGCAAGGATTGGTCAAGATACAAGTATAGTCACACTGACTTGATCTTATGTAATTATTAaagataattattaataacaattataataattattactttATCATAATATGCAAGCATGTTTTTATTGAGAATATATTTCTTGGATAGAAATAACAAATTCCAGTGGTTTGATGGTTGATTTATGCTCAGTTTTAATCTGGAATGTATTGAGTTTTCAGTACATGAAAAATAACtttcaaaatgaaagattattgcaggaaatattttctgaaaCAATAGATAATAACATAAGCCTGTTGCAAGCATTAACAGATAGATCTTTGCTGAATTTGCTTAAGTGATCACAAAATAATGGTTCCAAGTTGAGGATagacttgataaaatacagttaATGTATGAAGTTATCAAAGTCTAACCTCAACTTGAAGTcattgtttcatggtcactCAAGCAAAGTTGGTAAAGGTTTATTACTGGGTTGACATGACAAATGTACTTCAGTAAAACTATCTATTATCTTGCCGCAcagggggaaggggggaggggggtggtcTCAACATTTCCATTTGAATTGATCATAAacttgaatgtttttttcatgttcCAAAACAAGAATTCTTTTCATCtttgtgttttgaaaatacCCCCAAAGTGTTATGGTACAAATAACTTCATGCTCTTATAATTaacttatattatttttctgacTTAAGACACTAGTAATGCTTGAGCCAAGTAACTAaagttcgttttttttttttttacaaaaattatcaaattatttcCTGCTCCCTGAGCAATTAATCCCTAAACTTTCAACCataaaacatttgttttttctttttttacggCACATGAATGCATAGATAAAGATAATTTGTCACCTCTGACCTGAAGAGGTGTTTTAAGTAGGATAAGAAGAGGAGAGGGAGAATGCAATATTGTAcagatattttgtat

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZKH4	Nuclear distribution protein nudE-like 1 OS=Gallus gallus OX=9031 GN=NDEL1 PE=2 SV=1
Q9GZM8	Nuclear distribution protein nudE-like 1 OS=Homo sapiens OX=9606 GN=NDEL1 PE=1 SV=1
Q5R8T7	Nuclear distribution protein nudE-like 1 OS=Pongo abelii OX=9601 GN=NDEL1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007770 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04880 all species →	NUDE_C	NUDE protein, C-terminal conserved region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033494 all species →	Family	NUDE family	Interproscan
IPR006964 all species →	Domain	NUDE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10921 all species →	NUCLEAR DISTRIBUTION PROTEIN NUDE HOMOLOG 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000132 all species →	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005871 all species →	Cellular Component	kinesin complex	Interproscan
GO:0007020 all species →	Biological Process	microtubule nucleation	Interproscan
GO:0007059 all species →	Biological Process	chromosome segregation	Interproscan
GO:0007100 all species →	Biological Process	mitotic centrosome separation	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0047496 all species →	Biological Process	vesicle transport along microtubule	Interproscan
GO:0051303 all species →	Biological Process	establishment of chromosome localization	Interproscan
GO:0051642 all species →	Biological Process	centrosome localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16739	NDEL1; nuclear distribution protein NudE-like 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Anthopleura xanthogrammica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Anthopleura xanthogrammica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →