Gene detail

Detailed information of ENSOJPP00000024805.1 in Anthopleura xanthogrammica

Genomic Location: :...
NR annotation: XP_031571824.1, RNA binding protein fox-1 homolog 3-like isoform X1 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSOJPT00000028664

GCCGGTTCATCCGGGCCTTATTCACGACAGATAATATGCACCGAAGAATACTCgtatctgattggctgctcTATTGATTCTTTATTTGTATTCATTTTGATGGTTTTCTGTCACGCGTTCTCGTTGACACTTAGTAAGATCAGATGCATCGGTACAGTTAATAGTATTTTCTTCGCAAGGAATTACTCAATGAGCGAAAAGGTAGAAGAAGCTGAACCAGCCAAGACCAAAgatgttgaagaaaaagaaaacactgagAAACCAGAGGAATCTAAAGAGAAGAAGTTGGATAAAGAAGAGCCTTTGACGAATGGACTCCAGTACTCAACACAGCCAGGGATTCAAGCATACAGTCCAGTAACATCACAACTACAGCCAATTGTTCAAGACACAACCGCTCAACAACTCatacaacaacagcaacaacaacaacaacagcagcagcagcagcaacaacaggtTACTTTACCTATTACTTCGCCCTCACAGAGCGATGAATCTGGACATAAACGACTCCATGTTACAAATATCCCGTTTAGATTTCGAGATAATGATCTAAAGCAAATGTTTGGGCAATTTGGAACTGTGGTTGATGTTGAAATAATCTACAATGAACGCGGATCCAAGGGATTTGGATTTGTGACGTTCAGTAATGGTGAGGATGCCAACAGGGCGCGGGAAAAATTAAATGGCACGATCGTTGATGGCCGAAAAGTTGAGGTCAACAATGCCACTCCTCGACCGCTCGCCAAAAAAAGCCCGTCTCCCACGCGAGGACCATATAGCAACGGTCTTTCACGTAGTGTGAGAGGAACAAGAAGAGGAATTTTACCAATTACCAAGTTCACTACCAGGGCAATTCCTCAGTTAGCGATCCCAGCTGGTTATGAGGCAGCTGCCTATCCTGGtTTATACGAAGCATACGCCGATCAGTTATGGCAGACAGCGGCTTATCTCAGAAGACCAACATGCGCAGCTTACCCAAGTTACGAACTCGCATACACGACAGGATATCCGGCAACAGCAGCATACGCCGCTGCCCCGGCAGCCTACAGAACACAGATAGCAGCCCCTCCACCCTCCGTGGCCTACAGTACAGGATTCAGATATGCACCTTACTGATTAACatagacacacagacagacagacacacacacGATTACTCACTCATCCATTCAGCAATCCTACGTAATTTTAAATAGATCGATATTTGAAGAATATCATATAAAATATCTATAGTTACGGTAGGTTTGTGGAACAGAATCGAGCCGAGGAGAGGTGTAAATCATGCGTGTGATGCGCGCCGTCAAATCGTTAGCAACGCTCGCTCACGAATATTCTATTGacaaagaaagtttttttaaaaaaaatatcatgattattattatcgtaCTAAATTTTTGATACGCATTTCGGGGGGCCCTCCTCTTTCTCTCTCGAAGTGTGATTCATGACCATTGTAACATTATTTCTACAACTGCTTTCGTACTGCGATCGTAAAGTAAGGTATATGTAAGAGCCACTTAGTGGCCAAAGTTTTCATCTGAGTACATTTTGAATTGAGTGACCGCAGGAACAATAACCTGCTTAGTCTGCACAGCGGTTTAAAGTTAGCGCATGCGTGTGGCTCTTAAAGCAAGGATGCCTgttttttcccgccaaaatttacccttaaaaaatatattttcgaaAATGAAGATAGGAAATCTTAATATATTCCAAAAGCTAAGAGAAGTGTTTGGAATTaagctttattttattttattctattttatttacttttttctatCTTATAAAACCACATAATTTGGAatttttaaacctttttttccCCCAATAATATTTCGAgtttgggatacctgtgccGGTAGAACTCACACATGCGCTGCCTTTCGCCAAACTGTGTTTTCTTTCAATCAGATTTTGGAgttgacaattttttattcaataacTTGATTTTTAATGTGCGTAGAGGAGCTGgaaatgtttgaatttttcgatATGAACCGTTTGTAAT

Protein

Uniprot

Uniprot term	Description
Q95KI0	RNA binding protein fox-1 homolog 1 OS=Macaca fascicularis OX=9541 GN=RBFOX1 PE=2 SV=1
Q5NVN8	RNA binding protein fox-1 homolog 1 OS=Pongo abelii OX=9601 GN=RBFOX1 PE=2 SV=1
Q9NWB1	RNA binding protein fox-1 homolog 1 OS=Homo sapiens OX=9606 GN=RBFOX1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034237	Domain	FOX1, RNA recognition motif	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR047131	Family	RNA binding protein fox-1 homolog 1-like	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15597	ATAXIN 2-BINDING PROTEIN 1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000381	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007399	Biological Process	nervous system development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14946	RBFOX, FOX; RNA binding protein fox-1	-	Spliceosome	ko03041	deepkoala