Gene detail

Detailed information of ENSOJPP00000027853.1 in Anthopleura xanthogrammica

Genomic Location: chr9:11970705...11978821
NR annotation: XP_031567095.1, serine/threonine-protein kinase Haspin homolog ALK1-like [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSOJPT00000032202

ATGCCTCGAAAGGCTGGGTTAATCAAAACTTATGGCCGTCATAGGTTCAGAACGGTGAGAACAGCGCCTTGGGTTTCTCCAGACGATGTTTTTCGCTCACCAGTttcgaagaaagaaaagagtttTGAAACTCCAACGACTATTCGgaAAACTGTTCTAAAAACTTGTACAAATCTTCCCAAATCACACTGGAATATTCCAAAGCACAAAACTTCTTCATATGATGATAAGGAAAATACCCAAATAAACgaacaaaataaagaatggaagatcatatcaaatatttcaacaaagaACTCTCATTCTACACCTACCATCCCGGAACAAAAGCACTCCTCGATTGGATTTTCTTCTAGCAGCTTATCAACCTCTTCACCAGATTCGAGTTTAGATGAAGAATCCTATGTTATTCTACAACACAGGAGGAAACAACCAAACAGTACACTAGAATGTGTTATCCCAGAAACTCCTGAATTGAttcctgtcaatcaaaaaaatggTGAAAATACTCCCGATGAACCTTCCActtatttttaccaaaattccAGTTTATCTGCAAAGGTTTTGTCCAATTCAAGTATAAAATCAACAGAAAGCAGTTTCTCCAAGAATGCCAATGAAAGTATATCTCCACTTTATCAGTCCTTTGGGTCTGATATATCTTCTGCTGAGCAGCCATTACGCGCATCACAAGTTATAAGAAATAGGCTAAGTAATGGTCCATCCTGTTCGACAAGTACACCAATAATCAGAGCTAATTCACGGAACTCTCAACTTGTCACCAAAAGAggccaaaacaagaaaacatacTCTTCCAATTCACATAGTATTTCACTTTCAGACTGCCAGGTCTTTGTTCAGCCGATGAAACTCACACCAGAGCAGTACCAAGCAGCTAGACTATCCCTTGGTGATAATAATACATCAAAAAGCAGCTCTTTCACTATTTATTCAGCCAAAGAGTCTCCACAATCTGATCTATCAAAAATTAGTGTTGCAACAAATTTGGAAAGTGGAATTCAAGAAACTAAAAATACTCCAAGAATTTCTTCACGTAGTGGAAGCACAGACGGACTGGTCAGAGATTGTGTAGTTTCATTAGAGAAATTACGACTTTCTCCTTTGATTGGACAAGAAGGAAGGAAACGATCATGTACGTTCAGTGTATCAGGCAATAGTAGCTGTGCTAGTGGTTCGTCAGATGACCTGTCCATGCCTTCAACTCCACCCAGAAAACAAGCTTCACACATGTCTTTTGTGgAAGCACTGACTCCCATGAAAGTAAGCCCATCTACAAAAGAACTGTCTGCCTACCAGAAACTCCTGCTGGAATGTGAACAGGAGGCACCTATGAAATTCAATGAATATCTTAAACCAAGTTCACTGAAAAAATGTGCCAAGATTGGAGAAGGTGTCTATGGTGAGGTGTTTAAGACAATCAATAAATACAAACAGGCCGTGGCTCTAAagatTATCCCAATCAATGGTGACTTTGAAGTAAATGGAGAACCTCAGAAATCTTCAGAAGAAATCCTTcctgaaataataatatccaAGGAGCTGTGTGCATTGAAATATTCTgAAGAATTACAGGAAAATTCAGCCCCAAATTTCATAGATGTCAACAGagtGAGTTTGGTTCAAGACAAGTACCCGGCTCACCTGATCCGAGAATGGGTTAAATGGGACAAAaataaccaatcagagaatGATAAACCAGATATCTTCCCTTCAGACCAgtgttttcttgtgtttgaATTTGCTAATGGAGGTCAAGACTTGGAGCACTTTGAATTCAATTCCTATTCTGAAGCCGTCAGTGTACTACAACAGATAACACTATCCCTTGCCATAGCTGAAAGCAGCCTTGAGTTTGAACACCGTGACCTTCACTGGGGGAATGTCTTGATTATTCGCAACGATCAACAAGAAGTCAACTATTGTCTGAATGGACAAGCAATGCAGATAAATAGTTATGGAGTTCATGTCAGTATTATTGATTTTACACTCTCTCGGCTGAGAAAAGATGGTGTCACTGTATTTTGTAATCTTTCTGAAGATGAGTCACTCTTCACTGGTACCGGCGACTACCAGTTCGAAATATATCGTCAAATGCGGAAGATAAATGAAGATGACTGGGAGAAGTTTACTCCAGCAACTAATGTCCAATGGCTGCACTACATAACTGATaagatcagaaaaaaaaaatatccctCACGTGACAGGAAGATGATGGTATGGTTACGAAGTTTCTTTAACCAGGTCCAGGACTGTCGTTCTGCACAGGAGGTGGTATACAGTGACTTCTTTGAAGAAATGTGA

Transcript

ENSOJPT00000032202

TTCAAAAAGGCGGAAGCCTGAGTACGAACATTTCCAAATATGGCAAACGGTGGAAAAttcgaaaaaagaacaagaaacaaaatggctgCTGTTCGTTGTTTTAACACGAAAAAAGCTTCATAAAAGCATCTTTTTGAATGCCTCCTGGGCCAAAATGCCTCGAAAGGCTGGGTTAATCAAAACTTATGGCCGTCATAGGTTCAGAACGGTGAGAACAGCGCCTTGGGTTTCTCCAGACGATGTTTTTCGCTCACCAGTttcgaagaaagaaaagagtttTGAAACTCCAACGACTATTCGgaAAACTGTTCTAAAAACTTGTACAAATCTTCCCAAATCACACTGGAATATTCCAAAGCACAAAACTTCTTCATATGATGATAAGGAAAATACCCAAATAAACgaacaaaataaagaatggaagatcatatcaaatatttcaacaaagaACTCTCATTCTACACCTACCATCCCGGAACAAAAGCACTCCTCGATTGGATTTTCTTCTAGCAGCTTATCAACCTCTTCACCAGATTCGAGTTTAGATGAAGAATCCTATGTTATTCTACAACACAGGAGGAAACAACCAAACAGTACACTAGAATGTGTTATCCCAGAAACTCCTGAATTGAttcctgtcaatcaaaaaaatggTGAAAATACTCCCGATGAACCTTCCActtatttttaccaaaattccAGTTTATCTGCAAAGGTTTTGTCCAATTCAAGTATAAAATCAACAGAAAGCAGTTTCTCCAAGAATGCCAATGAAAGTATATCTCCACTTTATCAGTCCTTTGGGTCTGATATATCTTCTGCTGAGCAGCCATTACGCGCATCACAAGTTATAAGAAATAGGCTAAGTAATGGTCCATCCTGTTCGACAAGTACACCAATAATCAGAGCTAATTCACGGAACTCTCAACTTGTCACCAAAAGAggccaaaacaagaaaacatacTCTTCCAATTCACATAGTATTTCACTTTCAGACTGCCAGGTCTTTGTTCAGCCGATGAAACTCACACCAGAGCAGTACCAAGCAGCTAGACTATCCCTTGGTGATAATAATACATCAAAAAGCAGCTCTTTCACTATTTATTCAGCCAAAGAGTCTCCACAATCTGATCTATCAAAAATTAGTGTTGCAACAAATTTGGAAAGTGGAATTCAAGAAACTAAAAATACTCCAAGAATTTCTTCACGTAGTGGAAGCACAGACGGACTGGTCAGAGATTGTGTAGTTTCATTAGAGAAATTACGACTTTCTCCTTTGATTGGACAAGAAGGAAGGAAACGATCATGTACGTTCAGTGTATCAGGCAATAGTAGCTGTGCTAGTGGTTCGTCAGATGACCTGTCCATGCCTTCAACTCCACCCAGAAAACAAGCTTCACACATGTCTTTTGTGgAAGCACTGACTCCCATGAAAGTAAGCCCATCTACAAAAGAACTGTCTGCCTACCAGAAACTCCTGCTGGAATGTGAACAGGAGGCACCTATGAAATTCAATGAATATCTTAAACCAAGTTCACTGAAAAAATGTGCCAAGATTGGAGAAGGTGTCTATGGTGAGGTGTTTAAGACAATCAATAAATACAAACAGGCCGTGGCTCTAAagatTATCCCAATCAATGGTGACTTTGAAGTAAATGGAGAACCTCAGAAATCTTCAGAAGAAATCCTTcctgaaataataatatccaAGGAGCTGTGTGCATTGAAATATTCTgAAGAATTACAGGAAAATTCAGCCCCAAATTTCATAGATGTCAACAGagtGAGTTTGGTTCAAGACAAGTACCCGGCTCACCTGATCCGAGAATGGGTTAAATGGGACAAAaataaccaatcagagaatGATAAACCAGATATCTTCCCTTCAGACCAgtgttttcttgtgtttgaATTTGCTAATGGAGGTCAAGACTTGGAGCACTTTGAATTCAATTCCTATTCTGAAGCCGTCAGTGTACTACAACAGATAACACTATCCCTTGCCATAGCTGAAAGCAGCCTTGAGTTTGAACACCGTGACCTTCACTGGGGGAATGTCTTGATTATTCGCAACGATCAACAAGAAGTCAACTATTGTCTGAATGGACAAGCAATGCAGATAAATAGTTATGGAGTTCATGTCAGTATTATTGATTTTACACTCTCTCGGCTGAGAAAAGATGGTGTCACTGTATTTTGTAATCTTTCTGAAGATGAGTCACTCTTCACTGGTACCGGCGACTACCAGTTCGAAATATATCGTCAAATGCGGAAGATAAATGAAGATGACTGGGAGAAGTTTACTCCAGCAACTAATGTCCAATGGCTGCACTACATAACTGATaagatcagaaaaaaaaaatatccctCACGTGACAGGAAGATGATGGTATGGTTACGAAGTTTCTTTAACCAGGTCCAGGACTGTCGTTCTGCACAGGAGGTGGTATACAGTGACTTCTTTGAAGAAATGTGAAATTTGGTGTACAGTTGACATAGTGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z0R0	Serine/threonine-protein kinase haspin OS=Mus musculus OX=10090 GN=Haspin PE=1 SV=3
Q2KIP2	Serine/threonine-protein kinase haspin OS=Bos taurus OX=9913 GN=HASPIN PE=2 SV=1
Q8TF76	Serine/threonine-protein kinase haspin OS=Homo sapiens OX=9606 GN=HASPIN PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004875 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12330 all species →	Haspin_kinase	Haspin like kinase domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR024604 all species →	Domain	Serine/threonine-protein kinase haspin, C-terminal	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24419 all species →	INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0072354 all species →	Molecular Function	histone H3T3 kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16315	GSG2; serine/threonine-protein kinase haspin	EC:2.7.11.1	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Anthopleura xanthogrammica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Anthopleura xanthogrammica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →