Gene detail

Detailed information of ENSOJPP00000028195.1 in Anthopleura xanthogrammica

Genomic Location: :...
NR annotation: XP_031557089.1, nucleolysin TIAR-like isoform X1 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSOJPT00000032547

ATTACCGCCAATTACTAAAACCCTTTTAGCGCTTGACTCGCTTTAGCTTTGTGGCATTTTATGCTAAACGCGGACACACTTTTGCAAAGAATAACGAAAGATCTAGACTGTTTACAACGACCTTTCGTTCCTCGTAAATATTGGAACGTGTGAACAAGTCACGTACAAAGGGCCTGAGCACGTGAAAAACCCGGTCAGCGGTCAAGAACGTGACGTCACTGAAGTGATTGCGCATGTGCAGTTGAAGCCcagagtttttcttttcttttcttcgcgTGTTATCTGGGAAATTTTTCGCCATGGAGGCTAATGGGGAGGAGGAAAACAGAAGCCTTTATGTGGGCAACTTGGATCCTTCATGCTCAGAAGAACTGATCCACTCTATATTTAACGGCGTAGCTTCTGTATCAAGATGTAAGATGATCAACTCGACAACTGGGAAAGATCCTTATTGTTTTGTAGAATTCCATACTAATTCTGATGCAGCAAAAGCTTTATATCAAATGGATAGACGATTTATAATGGGAAAGAATATAAAAGTGAATTGGGCTACTAACAACCAGGGCATGAAGAGAGGAGAGACAAATAacCATCACCACATTTTTGTGGGAGACCTTGCCGAAGACATAGATGATACTACCCTACGAAAGGCCTTCCAACCTTTTGGGGACATATCtgAGGTGCGTGTTGTCAAGGACCCAGCAAATAAGAACAAGTCAAAAGGATTTGGATTTGTTGCATTTATCAGAAAAGATGATGCAGCAAAGGCCATTAATGAAATGAATGGTACAGAAATCAAGGGTAAAATAATTAGGACAAACTGGGCATCAAGGAAAAACCACCCTATACAGAgCAAACCTCTGAATTGGGAAGAAGTATTTCATAAATCATCTCAGTTGAACACAACGATTTATGTTGGTAATCTTCCACCAGATGTTAAAGATTATGATCTCCAGCAGTTGTTTGCACAGTATGGTACTATAGTGGAGATCAAGTTATTTGCTGATAAAGGATATGCATTCATAAAGTTTAGCACCCATAATGAAGCAACCAGTGGAATAGTAGGAACACATAATCAAACCACATTAGGAGATCCCAACAACCCTTACTTGCTCAGGTGTTCTTGGGGAAAAGAGACACCAGAGATGGTGAATTTCCAGCAGGCTGCAGCATGGCAGCACCAGTATTATGCGCCATTCTACTACCAACAAAcccagcagcaacaacaacaacagatgCAACCCAcacaacagcagcaaccaCAACAGTCTTATGTGCAATACCCTCAGTATGCAATGTATTATCAACACGGGGCCACCTATCCTACTGGCCAACAGGGCATGGCGATGTACCCTGTGCAGAATTACCAAGcAGCAGCTCAGATGTCTACTTCCCCCTCGTCAGGCATTCAAACTACGAACCAGTCACCACAGGTGATAGGTATGCAAGCCAGTGGAATGCTGGCTCCTCAAGGTGGTCCTACACCATCCTATGCTCTGCAGCCGGCTGCAGGCTACCATGCTCAGTGAACACTGAGTTAACGATGCTCAACAGATGATGATTTAAATGATGCTCTTTCTGAACGCTGTTTGCTACTTCTCTGATTACTCGACCACATATATCTAACTGCATCTTTCTGGCAGTAGTAGAGGTATTATTATACCAACCTTAAAATTTCTGCTCATTAACGTAATCTTGATGATTTTATCTAAATCTTTCGTTACTGAGCTTAAATATGAAGAATGGCTGGAAATATTCCACTTTGGGTATTCTAGTTTCCAACGCAACTATTAGTAATCATAATACCAGAGTATCCAATGTGGGCTATCTAGCCTCAATGTTATCATGAAAAATGGCGGCAAGGGTTATCTATCCTCGATATTCTCATGAAAAATGGCGGCAAATCGCCTGTTAATCACTTTCTAGTGTTAGCTAGCTGTTAGCGGCTGGTTATAAAGATAGTTTAGCCAGCCGGTGTAGTAGTCGATTCGATCAGAAGAAGTAGTAAAAATGTGAAGATATAATGAATTAAGGAAAAACTGTTAATCAgcgatgaaaaaaaaacaagccaAAAGAATGGAACCCCATCAAAAGCTGGGACTAAAATAGGCCAAAATGCTtgaaaaaatgaaccaaaatgtAGCAATAATAACATAAATACTAGACAAGAGTACAAATACAAGCTATGATTATATTGCTGAACCCTTTAATGTTGAAAAAGTAGTTTAATGTCCGAATATCTGCGTATTATGTGGCCGCAATTTTCACAGCCAACAAATAGTTTAGtacaaaaaattaaagcaattTTGGCCACCATGTACAGTTTCACAAAATGCTAACgtctatattttatatttattgtcTGCCATGGTTCGTCATGGTCGCCATTTCTCTATAAATCTGTCCTCCAAAGTCGTCTATTTTTCACCTGTTCTTTATTGTGGATTTTCTAGTATTTATGAACTAAAATGAGAACTTTTTCAACAGAAAATGGTTCTGAAAGTCATGTTTTCACTGACACAATCATT

Protein

Uniprot

Uniprot term	Description
Q01085	Nucleolysin TIAR OS=Homo sapiens OX=9606 GN=TIAL1 PE=1 SV=1
P31483	Cytotoxic granule associated RNA binding protein TIA1 OS=Homo sapiens OX=9606 GN=TIA1 PE=1 SV=3
P52912	Cytotoxic granule associated RNA binding protein TIA1 OS=Mus musculus OX=10090 GN=Tia1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050825	Family	RNA Recognition Motif and Poly(A) Binding Protein Families	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13201	TIA1, TIAL1; nucleolysin TIA-1/TIAR	-	Spliceosome	ko03041	deepkoala