Gene detail

Detailed information of ENSOJPP00000028809.1 in Anthopleura xanthogrammica

Genomic Location: not available for this species
NR annotation: XP_031559050.1, tyrosyl-DNA phosphodiesterase 2-like isoform X1 [Actinia tenebrosa]
Species abbreviation AXANT · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1NW29	Tyrosyl-DNA phosphodiesterase 2 OS=Gallus gallus OX=9031 GN=TDP2 PE=3 SV=2
Q9XWG3	5'-tyrosyl-DNA phosphodiesterase OS=Caenorhabditis elegans OX=6239 GN=tdpt-1 PE=1 SV=1
A8XU68	5'-tyrosyl-DNA phosphodiesterase OS=Caenorhabditis briggsae OX=6238 GN=CBG18823 PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005343 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14555 all species →	UBA_4	UBA-like domain	Domain	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR051547 all species →	Family	Tyrosyl-DNA phosphodiesterase 2-like	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15822 all species →	TRAF AND TNF RECEPTOR-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0016605 all species →	Cellular Component	PML body	Interproscan
GO:0070260 all species →	Molecular Function	5'-tyrosyl-DNA phosphodiesterase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19619	TDP2; tyrosyl-DNA phosphodiesterase 2	EC:3.1.4.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.