Gene detail

Detailed information of ENSOJPP00000030014.1 in Anthopleura xanthogrammica

Genomic Location: not available for this species
NR annotation: XP_031551785.1, E3 ubiquitin-protein ligase MARCH5-like [Actinia tenebrosa]
Species abbreviation AXANT · all data for this species · gene families

Sequence

CDS

Transcript

ENSOJPT00000034686

TACCGgcagaaaaagaatgaaatattttatttgcgaagttttttttcaatggcACCGGAAGCGGAAGTTAAAATAATCTTCCAGTTTTATTCTTTGgatgtgattggttgtgagGTAACATGATTCAGTGAAATTTCATCCGCCATCTTTAGTCACTTCAGCAAGTCGTGCTTCAAGACTTTGCCAACTTTTTAGTTGCATGGACTTTGTATTTGCTGCTTTGCCACTTTAAAACACTGCTAGGCACGAGCTATGGTCTAAGCACAAGCTATTTTGCTTTCtactgttttgttttatcaatGGAGGACGGAGATCGAGCCGACACAAGACGTTGTTGGGTATGCTTTGCCACTGACGAAGATGAACCCACAGCTCAGTGGGTGGAGCCATGCTTATGTCGTGGCACTACCAAGTGGGTACACCAGTCTTGTCTGCAGCGCTGGATTGACGAGAAACAAGCAGGAAACTCTACGGCAAGCGTGTCCTGTCCACAATGCAATACAGAATACAAAATAGTATTTCCCCCACTGGGACATCTTCTTAGTTTTATAGAAAAACTAGATCATGGTGTTAATAAAGTTTGCCCCTTCGCAGCTGCTGGGATAGTTGTGGGTTCGTTGTACTGGTCGGCAGTGACTTATGGAGCCGTTACAGTCATGCAAGTGTTAGGGCATAAGGATGGACTTGAGGTCATGGAAAAGGCTGACCCTTTATTTTTACTGGTTGGACTGCCAACCATCCCCTTGGCCCTTATTCTTGGCAAAATGATCCGATGGGAGGATCATGTCCTGAGGTTTTGGAGACGCTACATCAGCAAGATAGCATTGCTAAGTATCTTCTCCCCAAAAATAGGAAATGCAATTCAAGGTGTAGGGATTCATTATCGTGAGCCTGCTGAACCCACTCCTCTATCAGACCCAGTGTCAGCTACTAGAATACTGTGTGGAGGTCTTATAATGCCGACTATTGCAACTCTTATTGGTAAAGTTTGCTATGGTTTTGTGGAATCTGGACTACACAGGGCATTATTGGGTGGAATTACGTTTATTGGAATCAAAGGAGCAATCAGAATTTTCTACAAGCAGCAGCAATACATCAGACAAGCTCAGAGAGTTATTGAGAATTACAAGGATTAATAAACCAGAGTAAGAgcaaaaatgggccattttgATTACTTATACCGacccccccaaaaaatctGGCTGAgccttttttttcccttctttccttcctggATATCCATTTGTCTTTAACCATTACAGGGTTTAAGAGATTTTTGAGAGTGATTTTGAAAAACTCTCAAGAATCCAATACATGTATTTTTGGGTCCATTTCTAAAACACCCCCAAGATTGTTGATCATTTTATCCTAATCCTTCCTATCCTCCAGAATTTTATGAGATCCTCTGCTGACGAGGGCTACAAAAATAATAGCAATGACCAAATTTTAATGCATTCTACAAATGCAAGAATTAATTCCAAGATTTTTTGAAGTACTTGATGTTATTTAGTTAAGTTCTGTATTCACATGttggccatattggttgaaacaataagTTTTGAATCCCTTGCCCTTGCTTTGGGGCATTTTAGAATGTTCCAAAGAAAGTTTTTTGCTCTCATGCGAAtaaacatggccaccatgtgaTAAACGTTATTGTGAAAGGATCCCAATAACTCGAACCTTCAAAGGAAATACACAAatttttttgagttatttAGAGTTTGAGTTAACAGGGTTCTACTGTGTAATAATTCTGGTCATTGAGACCAAGACAGGGAAACTTTTTGATGAGCTAGTCACAGTTTAGAAGACCTTATAGTTAATGTGACAAAATGGACAGGTCATACCAGTATTCAGATTCCAAAAAATACAAGATTTCATTCAGTTTCTTAACCATCAGTGGGCAGGATTGACATCATGTCAAGCCGCAATTATGATTAAGACAGTCTATTTCCCTTACACATATTTTGTTATCCATTATTAATTCCACTTCTTTCAAAAGTTTTGCCCTTATGGTGTACATAGTATTAAATTAAGTTCTCAATAACAATGAAGTTTGGCAGACATTATCTTTCATCTCTCCTTCGAGGGATCTTGGAACACTTCAGTAGAGGAAATATCTCATCATAAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ZC24	E3 ubiquitin-protein ligase MARCHF5 OS=Bos taurus OX=9913 GN=MARCHF5 PE=2 SV=1
Q0X0A5	E3 ubiquitin-protein ligase MARCHF5 OS=Chlorocebus aethiops OX=9534 GN=MARCHF5 PE=2 SV=1
Q9NX47	E3 ubiquitin-protein ligase MARCHF5 OS=Homo sapiens OX=9606 GN=MARCHF5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007794 (this species only)
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12906 all species →	RINGv	RING-variant domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011016 all species →	Domain	Zinc finger, RING-CH-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46283 all species →	E3 UBIQUITIN-PROTEIN LIGASE MARCH5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005741 all species →	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0090140 all species →	Biological Process	regulation of mitochondrial fission	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10660	MARCH5; E3 ubiquitin-protein ligase MARCH5	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.