Gene detail

Detailed information of ENSOJPP00000030392.1 in Anthopleura xanthogrammica

Genomic Location: not available for this species
NR annotation: XP_031569734.1, endoribonuclease LACTB2-like [Actinia tenebrosa]
Species abbreviation AXANT · all data for this species · gene families

Sequence

CDS

Transcript

ENSOJPT00000035076

tttttcacatttttaaaattagctaaaattctcataacttctcaagaatttaatatttttgtctcaaactttctaactttgttgatgtcattctaatctataattttaatgtagcggtcaactaaaatatgaattaaaaaaattatgataatgaagtggcggccataatATTATTCCTCAGCTGCctgtgggttacctgtggtgaaCAAATGGGGAACAAGATGGCGTCGATAGCTGGTTCCCTTGTGGGACAAAACAGCAATCTTGTTCATATTCCTAACATCCAGCAGCTTTCTCCTCGAGTTATAAGAGTTCTAGGCTGTAACCCAAGTCCTATGACGCTACAGGGGACGAATACTTATCTCGTGGGCACTGGAAAAAGTCGTGTACTGATTGACACAGGTAATGGTGGCATACCAGAATACATTACAAACCTCAAAGAAACCATTCAGAATTATGACACAAGAATACAGGAGATAGTGGTAACACATTGGCATCCCGACCATGTTGGAGGGATAACAGATGTACTACGGCATGCTAGAAACCAGGGTGTGGAAGTCAAAGTatcaaagtttgaaagaaaaggatTTTCAGAGGATATTGAAGGTCATCAACAAGGGTACAACTACCTACAGGATGGTGATACTATAACTGTAGAGGGGTGTACCCTGCGTGCCTTGTATACACCAGGCCATACAACAGATCATATGGTCCTTTATCTTGAGGAAGAGAATGCTCTCTTCTCAGGAGACTGCATCCTTGGACAAGGAACTACTGTATTTGAGGATCTGTATGATTATATGAACTCCCTGAAAATAATTCTCAACTTATCACCCAATTTGATCTATCCAGGACACGGACCAGTAGTTGAGAATGCTACAGATGTAATAAAGGGATATATAGACCACAGAAACCAAAGAGAACAGCAGATCATTGAAactttaaagaaagaagaaggatCACCTGTGACAGCCATGGAACTtgtcaagaaaatatatacaGACACACCATGGTACTTACACAAAGCTGCTGAAAATAATGTCAACCATCATCTGACAAAACTgcaaaaagaaagcaaaattaCTTCTGTTCCTTTTGGAGATAATGTCAAATGGAAAAGCTCTTTGTAGTCCGACATGCTCAATAAAGATAAGTTATGTACAGTAGGAATAGGAAAATTGAAAGCAGACAAGAAGGTAACATGTATATTACATGTGTTATAACTTACAACTTTTGATTCCTCAACTGGTTTTACTCCGAGTGGAAGAGGACAAGATTCGAAGCACATGGCGATAAATTTTGcataattttaatattaaaatgttCAATCTATGATTCCCAATGTATGAGATACTATGAatagattcattcagctgattgataccaagcaatagaatactctctggttgataacACATGAcaggcagtgtttgcctgtcattgcaGGCTGGTGATGCGATTCATGAGactcattcagctgattgataccaagcaatagaatactctctggttgataacACATGAcaggcagtgtttgcctgtcattgcaGGCTGTTGATGCGATTCAATAGAtttattcagctgattgatactgAGCAATAggatactctctggttgatagcacaagTCATGAGGGGCAGTGTTTGACTGTCATTGTGGGCTGGTAATGCGATTCATAAGATTCATGCAGCTGATTGATACTAGtttaagcaatagaatactctctggttgatagcacatgacgggcagtgtttgcctgtcattgtaggctggtaatgagattcatgagattcattcagctgattgataccaagcaatagaatattctctggttgatagcacatgacgggcagtgtttgtctgtcattgtaggctggtaatgagattcatgagattcattcagctgattgataccaagcaatagaatattctctggttgatagcacatgacgggcagtgtttgtctgtcattgtaggctggtaatgagattcatgagattcattcagctgattgataccaagcaatagaatattctctggttgatagcacatgacgggcagtgtttgtctgtcattgtaggctggtaatgagattcatgagatttattcagctgattgatactgAGCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0V9A9	Endoribonuclease LACTB2 OS=Xenopus tropicalis OX=8364 GN=lactb2 PE=2 SV=1
Q6NYF0	Endoribonuclease LACTB2 OS=Danio rerio OX=7955 GN=lactb2 PE=2 SV=1
Q5XGR8	Endoribonuclease LACTB2 OS=Xenopus laevis OX=8355 GN=lactb2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005081 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17778 all species →	BLACT_WH	Beta-lactamase associated winged helix domain	Domain	Interproscan
PF00753 all species →	Lactamase_B	Metallo-beta-lactamase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR047921 all species →	Domain	LACTB2-like, MBL-fold metallo hydrolase domain	Interproscan
IPR050662 all species →	Family	Secondary metabolite biosynthesis-associated thioesterase	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR001279 all species →	Domain	Metallo-beta-lactamase	Interproscan
IPR041516 all species →	Domain	LACTB2, winged helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23131 all species →	ENDORIBONUCLEASE LACTB2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16639	LACTB2; endoribonuclease LACTB2	EC:3.1.27.-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.