Gene detail

Detailed information of ENSOJPP00000031698.1 in Anthopleura xanthogrammica

Genomic Location: :...
NR annotation: XP_031563918.1, DNA-directed RNA polymerase III subunit RPC1-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSOJPT00000036733

ATGTGTAACAACGATTCGTTTGTTGTGATTCATAACAGTGACTTGATGTGTGGTGCACTGGACAAGGCTGTGCTTGGATCAGGATCTAAGAACAGTGTCTTCTATGTTTTACTAAGAGACTATGGTCCCCAGTTTGCAGCAGATGCCATGTGGAGACTAGCAAGAATTTGCCCTTTCTTCCTGAGTAACAGAGGGTTTTCTATAGGGATTGGTGATGTCACTCCTGGACAAGGTCTTCTACAAGCAAAGGAGGACCTTCTCAATACAGGGTATTCCAAATGTGATGAGTTTATTCAAGATTTCAAAGAAGGCAAGCTGCAGACACAACCAGGCTGTTCAGCAGAAGAAACATTAGAGGCTGTTATTCTAAAAGAGCTGTCAGTCATCAGGGACCACGCGGGTAAAGCATGCTTGAGGGAACTACACAAGTCCAACACACCATTAACTATGGCTCTTTGTGGGTCTAAAGGGTCATTCATCAATATATCCCAGATGATCGCATGTGTAGGTCAACAAGCTATCTCAGGGAAAAGAATCCCAGACGGGTTTGAAGACCGTTCCTTACCTCACTTCAAACGACACTctAAAATACCCGCTGCAAAAGGATTCGTCAAGAACAGCTTCTTCTCTGGTCTGACGCCAACCGAGTTCTTTTTCCACACAATGGGAGGAAGAGAAGGTCTGGTAGATACCGCTGTCAAAACAGCCGAGACAGGCTACATGCAGAGACGACTAGTAAAGTCCCTGGAAGATTTGTGCACACAGTACGACCATACAGTCCGTAACTCCGTTGGGGATATCGTACAGTTCAAATACGGAGGCGATGGACTGGACCCTACTGACATGGAAGGCAAAGACAAACCATTGGACTTCCAAAGGGTCTTGAATCACATCCAGTGTAATCACGTGATGCGCACTGAgaatcccctccccccacagtCAGTTCGTCAACGTGTGAATAAGATAGTAGATGGAGAGCAGTTCATTAGCTGTTCTAATGACTTCAAGAATGAAGTGAAAGCCTTTATGGATGGAATCGCAAAGAAAATCGATCAGACGCAGCAAAAATATGGAATTGATTTTGACATAAACGACGACGAGGATGAAGAAGACGGCTTTTTATCACATCCAAAAGTTCTAAACTACGTAACTAGATTAACCGAATCTCAGCTGCGCATGTTCTTGACCATGTGCCGGGATAAGTACCTCCGGGCCCGTATGGAGCCGGGTACAGCAGTAGGGGCCATTTGCGCGCAGAGTATCGGAGAACCCGGTACACAGATGACACTCAAGACCTTTCACTTTGCTGGCGTTGCTTCTATGAACATCACACTTGGTGTACCACGTATCAAGGAAATCATTAACGCTTCACGTAAGATCAGCACTCCCATCATATCAGCACAGCTACTGCAGGATAATGATGCTGAATTGGCTCGTGCTGTCAAGGGCAGGATAGAGAGGACCCTTCTGGGCGAGGTGACTGAATACATCGAGGAGGTGTACACACCAGATGACTGTTACCTATTAATCAAGCTCGCTGTTCCAAGAATAAAACTGTTGAAGcttgaaGTCGATGCATACTCAATACGCATGTCAATATGTGTAGCGCGTAAATTAAAGATCAATCAACAGAACGTACAGATTCACAGCAATGCTGTCATAACGGTTCATCCCACGGAGACAAGCAAAAGCTCTTTACATTACATGATGCAGTATCTACGGGTAGAACTACCGAAAGTGCTTGTCAAGGGTCACAAAAATGTCAACCGTGCTATAATCCACATCGACGATGAACATGCTAGTGGCGAGGAACGCTATAAGCTTCTTGTGGAAGGAGATGACCTACAGGCTGTCATAGCAACCATGGGGGTTAAAGGTACTGCCTGCTCGTCTAACAATACTATAGAAGTAGAGAGGGTACTGGGAATAGAGGCCGCCAGGCAAACGATCATGAACGAGATCATCTACACGATGAAGAACCATGGTATGAGTATTGATGTTCGCCACGTCATGTTACTGGCTGAGCTCATGGCATTTAAGGGTGAGATTCTTGGGATCACGCGCTTTGGTCTCGCGAAGATGAAAGAAAGTGTTCTCATGTTGGCTTCGTTTGAAAAAACCGCTGACCACTTGTTCGAGGCGGCTCTTCAGGGTAGAACTGATCCTATCGACGGAGTCAGCGAGTGTATAATTATGGGCATGCCTATGAACGTTGGAACGGGAATATTCAAACTTCTACACAAATATCCTTTTCTACAAagaacttatttttttaactacACA

Transcript

ENSOJPT00000036733

CACATCTGATGAAGACATGTGTAACAACGATTCGTTTGTTGTGATTCATAACAGTGACTTGATGTGTGGTGCACTGGACAAGGCTGTGCTTGGATCAGGATCTAAGAACAGTGTCTTCTATGTTTTACTAAGAGACTATGGTCCCCAGTTTGCAGCAGATGCCATGTGGAGACTAGCAAGAATTTGCCCTTTCTTCCTGAGTAACAGAGGGTTTTCTATAGGGATTGGTGATGTCACTCCTGGACAAGGTCTTCTACAAGCAAAGGAGGACCTTCTCAATACAGGGTATTCCAAATGTGATGAGTTTATTCAAGATTTCAAAGAAGGCAAGCTGCAGACACAACCAGGCTGTTCAGCAGAAGAAACATTAGAGGCTGTTATTCTAAAAGAGCTGTCAGTCATCAGGGACCACGCGGGTAAAGCATGCTTGAGGGAACTACACAAGTCCAACACACCATTAACTATGGCTCTTTGTGGGTCTAAAGGGTCATTCATCAATATATCCCAGATGATCGCATGTGTAGGTCAACAAGCTATCTCAGGGAAAAGAATCCCAGACGGGTTTGAAGACCGTTCCTTACCTCACTTCAAACGACACTctAAAATACCCGCTGCAAAAGGATTCGTCAAGAACAGCTTCTTCTCTGGTCTGACGCCAACCGAGTTCTTTTTCCACACAATGGGAGGAAGAGAAGGTCTGGTAGATACCGCTGTCAAAACAGCCGAGACAGGCTACATGCAGAGACGACTAGTAAAGTCCCTGGAAGATTTGTGCACACAGTACGACCATACAGTCCGTAACTCCGTTGGGGATATCGTACAGTTCAAATACGGAGGCGATGGACTGGACCCTACTGACATGGAAGGCAAAGACAAACCATTGGACTTCCAAAGGGTCTTGAATCACATCCAGTGTAATCACGTGATGCGCACTGAgaatcccctccccccacagtCAGTTCGTCAACGTGTGAATAAGATAGTAGATGGAGAGCAGTTCATTAGCTGTTCTAATGACTTCAAGAATGAAGTGAAAGCCTTTATGGATGGAATCGCAAAGAAAATCGATCAGACGCAGCAAAAATATGGAATTGATTTTGACATAAACGACGACGAGGATGAAGAAGACGGCTTTTTATCACATCCAAAAGTTCTAAACTACGTAACTAGATTAACCGAATCTCAGCTGCGCATGTTCTTGACCATGTGCCGGGATAAGTACCTCCGGGCCCGTATGGAGCCGGGTACAGCAGTAGGGGCCATTTGCGCGCAGAGTATCGGAGAACCCGGTACACAGATGACACTCAAGACCTTTCACTTTGCTGGCGTTGCTTCTATGAACATCACACTTGGTGTACCACGTATCAAGGAAATCATTAACGCTTCACGTAAGATCAGCACTCCCATCATATCAGCACAGCTACTGCAGGATAATGATGCTGAATTGGCTCGTGCTGTCAAGGGCAGGATAGAGAGGACCCTTCTGGGCGAGGTGACTGAATACATCGAGGAGGTGTACACACCAGATGACTGTTACCTATTAATCAAGCTCGCTGTTCCAAGAATAAAACTGTTGAAGcttgaaGTCGATGCATACTCAATACGCATGTCAATATGTGTAGCGCGTAAATTAAAGATCAATCAACAGAACGTACAGATTCACAGCAATGCTGTCATAACGGTTCATCCCACGGAGACAAGCAAAAGCTCTTTACATTACATGATGCAGTATCTACGGGTAGAACTACCGAAAGTGCTTGTCAAGGGTCACAAAAATGTCAACCGTGCTATAATCCACATCGACGATGAACATGCTAGTGGCGAGGAACGCTATAAGCTTCTTGTGGAAGGAGATGACCTACAGGCTGTCATAGCAACCATGGGGGTTAAAGGTACTGCCTGCTCGTCTAACAATACTATAGAAGTAGAGAGGGTACTGGGAATAGAGGCCGCCAGGCAAACGATCATGAACGAGATCATCTACACGATGAAGAACCATGGTATGAGTATTGATGTTCGCCACGTCATGTTACTGGCTGAGCTCATGGCATTTAAGGGTGAGATTCTTGGGATCACGCGCTTTGGTCTCGCGAAGATGAAAGAAAGTGTTCTCATGTTGGCTTCGTTTGAAAAAACCGCTGACCACTTGTTCGAGGCGGCTCTTCAGGGTAGAACTGATCCTATCGACGGAGTCAGCGAGTGTATAATTATGGGCATGCCTATGAACGTTGGAACGGGAATATTCAAACTTCTACACAAATATCCTTTTCTACAAagaacttatttttttaactacACA

Protein

Uniprot

Uniprot term	Description
O14802	DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens OX=9606 GN=POLR3A PE=1 SV=2
Q5ZL98	DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus OX=9031 GN=POLR3A PE=2 SV=1
A4IF62	DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus OX=9913 GN=POLR3A PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04998	RNA_pol_Rpb1_5	RNA polymerase Rpb1, domain 5	Domain	Interproscan
PF05000	RNA_pol_Rpb1_4	RNA polymerase Rpb1, domain 4	Domain	Interproscan
PF04983	RNA_pol_Rpb1_3	RNA polymerase Rpb1, domain 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007081	Domain	RNA polymerase Rpb1, domain 5	Interproscan
IPR042102	Homologous_superfamily	RNA polymerase Rpb1, domain 3 superfamily	Interproscan
IPR035698	Domain	DNA-directed RNA polymerase III subunit RPC1, C-terminal	Interproscan
IPR045867	Family	DNA-directed RNA polymerase, subunit beta-prime	Interproscan
IPR038120	Homologous_superfamily	RNA polymerase Rpb1, funnel domain superfamily	Interproscan
IPR007083	Domain	RNA polymerase Rpb1, domain 4	Interproscan
IPR007066	Domain	RNA polymerase Rpb1, domain 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19376	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0001056	Molecular Function	RNA polymerase III activity	Interproscan
GO:0005666	Cellular Component	RNA polymerase III complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03018	RPC1, POLR3A; DNA-directed RNA polymerase III subunit RPC1	EC:2.7.7.6	Transcription machinery	ko03021	deepkoala