Gene detail

Detailed information of ENSOJPP00000031889.1 in Anthopleura xanthogrammica

Genomic Location: chr3:12747717...12753954
NR annotation: XP_031556455.1, phospholipase ABHD3-like [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSOJPT00000036997

ACCGGGAAATAacacacaaaacaaaatggagaCTCTGTAcaattttcttcatattttatacGATTGGCAATGGTTTCCGTTGATGTCTGCGCTCCTGACTGTTTATCttacttattattttttcttcgtgGTGAAGAAGCCTCGAATAATTGGTAAAGATGGCCCATTTCGTCGTTTTTTGGTCGAGAAGTGCGGAGTACTGTCAGAATATTACTACCCTACGATCTGGTGTTTCGGTCCTCATGCTCAGACTGTAATCAGAGCTTTGTTGAGACTTCGTCCTCATGTTCCTTTTAGAAGGGAGACCCTTGACACTCCAGATGGAGGTATTGTATGCCTGGATTGGTTTGATCATCATGACAGTCACCATGACGACCCAATAAAAAGACCAACTGTTCTTATTCTTCCAGGACTTACTGGTGGCAGTGAAACAAGCTATTGTCGTCATTTGGTTCTTCAAGGAGAAAAACTAGGTTACAGGACAATTATTGCAAATCATAGAGGATTTGGTGCATCACAGCTGAAGACTCCAAGGACATTCTGTGCCGCCAACACAGAGGACCTCATATTTGTCCTGGACCACATACACAAAAATTATCCAGGCTGCCCAGTAATTGGTGTTGGTATTTCAATGGGCGGTATGATCATGATGAACTACCTCAATGAGATGAGTGAAAAAGAGACAGGCCTTATTGCTTGTTTAGTAGTATCAACACCATGGAACTGTGCTGAATCCACTCTGTCTCTAGAACAGCCTTTGAACTTCTTGCTGTTCAATAGACGCTTGACAGGAAACCTTGTCAGGATGGTCAAAGGGAATCTCGATGTTTTCAAGAATCACCTTGGTAAAGCAGATAAAGCCCCATACGATATTCATCATGTTTTGCAGgcCAAGACTGTCCGTGAATTTGACGAACGCTTCACCTCACCAACATTTGGTTACAAAAGCTATGAAGACTATTACAATGCTGCGTCGCTGCACACCAAACCACTTCATAGGATCCGAGTTCCTGTCCTCTGTTTGACGGCAGCTGACGATCCTTTCTCACCAGAACACGCTATTCCAATCGATACAATAGAAGAAAACCCTCTCATTTCCATGGTGATGACTTCatatggcggccatattggttttCTACAAGGATTCAGTATTCACGATGACAACTATCTTGACCGCGTGTTTGTTGACTTCGCACGAGGAATTTTTGATTTGGAACAACAGGGAAAACTAAAGCAACTGGTGCAGGACACTTTAAACcacaatgatgatgaaaactaggtgatttttattttattcgtATTTTGTACAAATGGAAAAACTGCCCGgctctaaataaataatggcCTCCACCTTTCAAGCACTGTGATTGAATACCTttgatcccccccccccccccccacaaatACAGATCTTGATGGTGAGACTCGGGAAAGATGGAGACCATGCGCCGCGAAAATCTGTAAAATTCGGTTGTAAatttatttgtaaattatGAATCTGTATATGTTTAGTTTTTCatcttaatttaatttatattcgtgtattttatattattttcacttGCTGTAATGTTCACTGTGACAATCtgtataattttatatttatggtTTTACGTTTTTTATTCTTTGGTATAATGTTATTTCGTCAGTGTGtataaatattatcaatattatcgATTATCAGAGGAAAATTAGTCATTCTCCCCTGCCATTATTTCTCCTGCAGGGGttagaatttaatttttttaatgacaagataaacttattCGAGTTGTGCATTACaagcagctacaagataaatggattgaatgcaaaCGCAAAGACTTTATTTGTCTTCGCATATCATATCAtgaaatatcattattttctaaaaagagaactagatAGAAAATGCGAGTTCAATTacttttcactcgatatttgtaattttaaactcgcatttagccaattattTTGTGGGAATTTCGAACCCTGTTGTGATGCGAAATCGGTCTAACAGATCTAGAGTGGTTTTCGAATGAGAGGGAAACGATACGGCCGAAAatcgtagccgtactg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0VC00	Phospholipase ABHD3 OS=Bos taurus OX=9913 GN=ABHD3 PE=2 SV=1
Q91ZH7	Phospholipase ABHD3 OS=Mus musculus OX=10090 GN=Abhd3 PE=1 SV=1
Q8WU67	Phospholipase ABHD3 OS=Homo sapiens OX=9606 GN=ABHD3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002418 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00561 all species →	Abhydrolase_1	alpha/beta hydrolase fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR012020 all species →	Family	AB hydrolase 4 family	Interproscan
IPR050960 all species →	Family	AB hydrolase superfamily, subfamily 4	Interproscan
IPR000073 all species →	Domain	Alpha/beta hydrolase fold-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10794 all species →	ABHYDROLASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008126 all species →	Molecular Function	acetylesterase activity	Interproscan
GO:0034338 all species →	Molecular Function	short-chain carboxylesterase activity	Interproscan
GO:0044255 all species →	Biological Process	obsolete cellular lipid metabolic process	Interproscan
GO:0047372 all species →	Molecular Function	monoacylglycerol lipase activity	Interproscan
GO:0051792 all species →	Biological Process	medium-chain fatty acid biosynthetic process	Interproscan
GO:0051793 all species →	Biological Process	medium-chain fatty acid catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13696	ABHD1_3; abhydrolase domain-containing protein 1/3	-	General function prediction only	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Anthopleura xanthogrammica tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Anthopleura xanthogrammica, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →