Gene detail

Detailed information of ENSOJPP00000032140.1 in Anthopleura xanthogrammica

Genomic Location: not available for this species
NR annotation: XP_031561744.1, protein ZGRF1-like isoform X1 [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Sequence

CDS

ENSOJPT00000037307

ATGTCAAGTAAAGAGTACAAGGTTTTGTACACTcaccagaaaacaaaaaagcacAAAACATGGCAGgaTGGTATTCTCATCCTCTACGCAAATACAAAGAAAGTAGTGTTATATGAGGATGGTATGAGAACTATGTTGGACTCACTATTTGTCCGTTCTGACCAGATAACTGTTGGAGATGACATTGAGTCAGAGAGGTACTTGATAACCATTGAAGACGAGACTAATAAAACTGGTGCTGATTCAGGTTGTCAAGTTTCTAGCCAACCATGCCTAGTCAACTCTAGTCATGACAAATCActcaagaaaaagaacaaggaattttgtcctccaaagtttgtggtaaaagaaaaaaaaatattgaataaagcTGAACCTTCTGATGAAAGGTTAAAAGCATGGGATAAACATTCTACAAAAAGCTCTCAAACAAAAGATCGGGAAATGCTatcaaaaaaacagttttttacaATGTATTCCAAGAAAAACCAGAACTTGCTAGAAAACCGGAAATTTGATAAGGAAACAACAAGAACAGATGATCAGCACAAGTTACCGGTATCCCCAGAAAGCAATCTAATCATTAATCAAAGTTGCTATAGTAAAAGAGATACCTCACAAATTTTGGCTTTGTTCACTGGAAACCGTGTTTCTAAGTCTGAAGAAAAaagtgatgattttgatgttcTTCAAGTATGTCCTCTATCACCAGAAATATATGTCAGTGATGATCCATGTCATGATGACATCAGTAACAATTCTCACGCCTCACCAGTATGTTTTCACAGATTACCAGCAGTCTTAAACAAGCCTTACTCTAACCCACTTGTTGTATGTGAGAATTCCTGCAATGATATTCCCTTTGACACTggagataatttatttcaagTCCCTGACGTAGACACTAAAGACCATAAAAGAGAACCCTCACCCTATTCCATCAATATCACCTGCATTAGGGAGTCAACAGTAGGTTCCAGGAAGGAACATCAAAAGAAGCCTACTCACTTGTGTTCAACcattaagcaaaaacaaagcaGTAGACATACAGGACTGGCCAGGAATGTCAGCAAAACATCAATCAAGGATAATGAGCATGAGTTGGTTTTTCCCACATCAAAAGATTGTGAGGATAATGTGAAGCCATGTCGTCAAGTTATTATACCAATCACATTTCAAAACTGTCACCATTATCAGCAAACACTCAAGGCTGCTGTAAGAGAACACTTGAACATTATGTTGTTTGAATTGGCACAGAATTACCACTCTGCTTTGAGAAAAGTAGATATTACACAATATAGCACAGTCAATCAAGGTCAGGTAAGCGATGACAGGCCAAGCTGCCCCCATGGTGTTTGCCGTCTTAGATCAGTTAAAAAAGAAGGACCAAACAAGGGGAAGCTATTTTACTGCTGTCCTGGAACAAACAAATCACAATGCAAGTTCTTTAAATGGGTTAATGAATTCAAGAATTCCAAACACACCAACAAACCAACTCCACAAACCAGTAAACCTAGTTTGTGTTCAGCTGATGCAGTTGTTGAGTTCTTTACCAATCAGGGTTTGACTTTGCACTGTCAGTGTCGTTTGATCATCAAACGTAAAAATACACATACTGGAAAACATGGAGGATACAGATACTCAAGGAAACGTCTTGAACAAGGTGACAACACAGACTACAAGAAATCAATATACCTTGAGTTGAGCAATAAGCGAAGGCCTTATGTTTCCTACAGCAAAGATGATGTGTGGATTGTATCAAAAAGTTTGTTGTTTGAAAAAGGAAGCACATTTGTGGCTAAAAGTACATACTTTGGTCCATTCTCTAGTGGTGAATTAGAGATTTCCCCTATTGGTGGTTATTACCCTTCAAACTGGCATTCTGGAGatacAGTGTATGCTTTGCATGGCTGTAATGCAAGCAATGAGTTACTGTGTATCGAAAATATTGATGTGTATGTCAATAATCGTTGCCTGCCTTTACTGGACAGTTTATTATACAGGCAAAGTGATGCTACATCAACAAGACGACCACAGGGTCCTGGTGACATGTCGTTTGTACCTCCAACACCAAGTTTACATAGACTGCTCAATGACATCCCCACAGATGTCGCGgtTAAGGTTGCCAAGGAAATGATTCACGAATATCGTTTGAATACGGACCAAGGACTTGCCCTGATTAACTGTGCCAATATGTTTACTGATGGTCTGTCAGACATCTCTCTAATACAtgGAGTTTTTGGTGCTGGGAAAAGTTATCTTCTTGCTGTAACCATTCTTTACCTTgtgaaattatttacaaagatCACCGCACAACATGAAGGAGCAAGTAATGTGTCTAAGCCCAAAATACTTGTGTCTTCAACGACTAATGTAGCAGTTGACCGTATCCTTCTTGTTCTACTGGAGTTGGGGTTTGAAGAGTTTGTTCGTGTTGGTAGCGTCCGTAAGATAGCTAAGCAACTGCTACCTTATAGCATGCAAGGAAGTGGTAGCCAGGACCAGGAACTAAAGGAATTGCAAGCTATGCTTAAAGAGGATCTACAACCATCCGAAAAGCAGAATATTCGCAAGAGCATCGAGAAACAAAGACGTGGTGAAAACAAAAAGAGACTTGACCGAGTGCAAGTGGTAGGAGTCACGTGTGCAGCTTGTGTATTTCCATGCTTggaaaagatgaaattttcTGTTGTTTTGCTTGATGAATGTAGTCAAATGACCGAACCGACTGCTCTTCTTCCTTTAGCAAGGTTTGGATGTGAAAAACTGATTCTTGTTGGAGACCCCAAGCAATTGAGTCCAACTATACCAGGATCAACACAGGGATCTCATCTCGAGAACCATGCAGGACTTGAACAAACACTATTTGATCGTCTAACCAAGATGGGTTATAGAACTACACTTCTTAGAACCCAGTATCGTTGTCATCCTACTATTAGCGCTGTTGCCAACAGGTTGTTTTATGAAGGCCATTTAATCGATGGAATTACTCCAGAAGACAGAGCTCCTCTTGTGAGTTTTGCTCCAACATTATGTTTCTACGATGTGCCACGAGGTCAAGAGAAATATGGATACGATGGGAGTTTTAACAACGAGCAAGAAGCGAAATTCGTTGTATTTCTTGTTGGCTGTTTCTTAGAATCTGGGGTAGAACCAGAGCAGCTAGGCGTGATCACTCTCTACAAGTCGCAACTTGTAACGATCTCCTCGCACTTGGCTCAAAGCCGATTGGCTTCTCACCAACAACTCAAAGCAGTGCAGATCTCTACAGTAGATGCATTCCAAGGAGGCGAAAAGGACGTTATTTTGTTGTCTTGCGTACGAACAGATCATGTGGGTTTTATTGATTGTGGCAGACGCACAAATGTGGCACTTACCAGAGCAAAGCGACATTTATTGATTATTGGTAATGAACGCATGCTGTCCAGTAATGACTTGTGGAGGAATGTAATCGAAGAATGCAGAGCTCAACCAGGTGGTATGGTTTTAGAGAAGAATTTCAAGAGTTCTTGGCAAAAAGatAATATCGATCCTCCTTCGCCGTCAACCCATACTGACCACCAGTATCCTGTGACTAATATGACAGACGTTCCAAAAAGCTATTATGGTGACGTTTTGTCTCCATCAACTGATAAGGAAATCCAAGACAGTTGTTCGCAGTCAACTTTCGATTTCTTCCTTGAATCTCCatctgctgatgatgatgatgttgaaatGGTAATACCCGAGCTTTCATCGACTGAGAATAGCAATACTGGTATTACGAATGGCATACAAAGCCTGTCACAGGAGACTAGCATACCTCGATCTCTGTAG

Transcript

ENSOJPT00000037307

CGGTCAGGACTGACCGGGTGCGAATAGAAGACTGGTACTCAGCAAGGTCGAAGCGCGGTAAAACACGAAAAAGACAACAAGACACAAGATAAGACAAGATGGCCGCCTCTTGTTGTCTcagtcaaaaagaaaaagttgttTGATACGTGTCTGCTAGCTTAAGTTTGGCAAGCTATGTCAAGTAAAGAGTACAAGGTTTTGTACACTcaccagaaaacaaaaaagcacAAAACATGGCAGgaTGGTATTCTCATCCTCTACGCAAATACAAAGAAAGTAGTGTTATATGAGGATGGTATGAGAACTATGTTGGACTCACTATTTGTCCGTTCTGACCAGATAACTGTTGGAGATGACATTGAGTCAGAGAGGTACTTGATAACCATTGAAGACGAGACTAATAAAACTGGTGCTGATTCAGGTTGTCAAGTTTCTAGCCAACCATGCCTAGTCAACTCTAGTCATGACAAATCActcaagaaaaagaacaaggaattttgtcctccaaagtttgtggtaaaagaaaaaaaaatattgaataaagcTGAACCTTCTGATGAAAGGTTAAAAGCATGGGATAAACATTCTACAAAAAGCTCTCAAACAAAAGATCGGGAAATGCTatcaaaaaaacagttttttacaATGTATTCCAAGAAAAACCAGAACTTGCTAGAAAACCGGAAATTTGATAAGGAAACAACAAGAACAGATGATCAGCACAAGTTACCGGTATCCCCAGAAAGCAATCTAATCATTAATCAAAGTTGCTATAGTAAAAGAGATACCTCACAAATTTTGGCTTTGTTCACTGGAAACCGTGTTTCTAAGTCTGAAGAAAAaagtgatgattttgatgttcTTCAAGTATGTCCTCTATCACCAGAAATATATGTCAGTGATGATCCATGTCATGATGACATCAGTAACAATTCTCACGCCTCACCAGTATGTTTTCACAGATTACCAGCAGTCTTAAACAAGCCTTACTCTAACCCACTTGTTGTATGTGAGAATTCCTGCAATGATATTCCCTTTGACACTggagataatttatttcaagTCCCTGACGTAGACACTAAAGACCATAAAAGAGAACCCTCACCCTATTCCATCAATATCACCTGCATTAGGGAGTCAACAGTAGGTTCCAGGAAGGAACATCAAAAGAAGCCTACTCACTTGTGTTCAACcattaagcaaaaacaaagcaGTAGACATACAGGACTGGCCAGGAATGTCAGCAAAACATCAATCAAGGATAATGAGCATGAGTTGGTTTTTCCCACATCAAAAGATTGTGAGGATAATGTGAAGCCATGTCGTCAAGTTATTATACCAATCACATTTCAAAACTGTCACCATTATCAGCAAACACTCAAGGCTGCTGTAAGAGAACACTTGAACATTATGTTGTTTGAATTGGCACAGAATTACCACTCTGCTTTGAGAAAAGTAGATATTACACAATATAGCACAGTCAATCAAGGTCAGGTAAGCGATGACAGGCCAAGCTGCCCCCATGGTGTTTGCCGTCTTAGATCAGTTAAAAAAGAAGGACCAAACAAGGGGAAGCTATTTTACTGCTGTCCTGGAACAAACAAATCACAATGCAAGTTCTTTAAATGGGTTAATGAATTCAAGAATTCCAAACACACCAACAAACCAACTCCACAAACCAGTAAACCTAGTTTGTGTTCAGCTGATGCAGTTGTTGAGTTCTTTACCAATCAGGGTTTGACTTTGCACTGTCAGTGTCGTTTGATCATCAAACGTAAAAATACACATACTGGAAAACATGGAGGATACAGATACTCAAGGAAACGTCTTGAACAAGGTGACAACACAGACTACAAGAAATCAATATACCTTGAGTTGAGCAATAAGCGAAGGCCTTATGTTTCCTACAGCAAAGATGATGTGTGGATTGTATCAAAAAGTTTGTTGTTTGAAAAAGGAAGCACATTTGTGGCTAAAAGTACATACTTTGGTCCATTCTCTAGTGGTGAATTAGAGATTTCCCCTATTGGTGGTTATTACCCTTCAAACTGGCATTCTGGAGatacAGTGTATGCTTTGCATGGCTGTAATGCAAGCAATGAGTTACTGTGTATCGAAAATATTGATGTGTATGTCAATAATCGTTGCCTGCCTTTACTGGACAGTTTATTATACAGGCAAAGTGATGCTACATCAACAAGACGACCACAGGGTCCTGGTGACATGTCGTTTGTACCTCCAACACCAAGTTTACATAGACTGCTCAATGACATCCCCACAGATGTCGCGgtTAAGGTTGCCAAGGAAATGATTCACGAATATCGTTTGAATACGGACCAAGGACTTGCCCTGATTAACTGTGCCAATATGTTTACTGATGGTCTGTCAGACATCTCTCTAATACAtgGAGTTTTTGGTGCTGGGAAAAGTTATCTTCTTGCTGTAACCATTCTTTACCTTgtgaaattatttacaaagatCACCGCACAACATGAAGGAGCAAGTAATGTGTCTAAGCCCAAAATACTTGTGTCTTCAACGACTAATGTAGCAGTTGACCGTATCCTTCTTGTTCTACTGGAGTTGGGGTTTGAAGAGTTTGTTCGTGTTGGTAGCGTCCGTAAGATAGCTAAGCAACTGCTACCTTATAGCATGCAAGGAAGTGGTAGCCAGGACCAGGAACTAAAGGAATTGCAAGCTATGCTTAAAGAGGATCTACAACCATCCGAAAAGCAGAATATTCGCAAGAGCATCGAGAAACAAAGACGTGGTGAAAACAAAAAGAGACTTGACCGAGTGCAAGTGGTAGGAGTCACGTGTGCAGCTTGTGTATTTCCATGCTTggaaaagatgaaattttcTGTTGTTTTGCTTGATGAATGTAGTCAAATGACCGAACCGACTGCTCTTCTTCCTTTAGCAAGGTTTGGATGTGAAAAACTGATTCTTGTTGGAGACCCCAAGCAATTGAGTCCAACTATACCAGGATCAACACAGGGATCTCATCTCGAGAACCATGCAGGACTTGAACAAACACTATTTGATCGTCTAACCAAGATGGGTTATAGAACTACACTTCTTAGAACCCAGTATCGTTGTCATCCTACTATTAGCGCTGTTGCCAACAGGTTGTTTTATGAAGGCCATTTAATCGATGGAATTACTCCAGAAGACAGAGCTCCTCTTGTGAGTTTTGCTCCAACATTATGTTTCTACGATGTGCCACGAGGTCAAGAGAAATATGGATACGATGGGAGTTTTAACAACGAGCAAGAAGCGAAATTCGTTGTATTTCTTGTTGGCTGTTTCTTAGAATCTGGGGTAGAACCAGAGCAGCTAGGCGTGATCACTCTCTACAAGTCGCAACTTGTAACGATCTCCTCGCACTTGGCTCAAAGCCGATTGGCTTCTCACCAACAACTCAAAGCAGTGCAGATCTCTACAGTAGATGCATTCCAAGGAGGCGAAAAGGACGTTATTTTGTTGTCTTGCGTACGAACAGATCATGTGGGTTTTATTGATTGTGGCAGACGCACAAATGTGGCACTTACCAGAGCAAAGCGACATTTATTGATTATTGGTAATGAACGCATGCTGTCCAGTAATGACTTGTGGAGGAATGTAATCGAAGAATGCAGAGCTCAACCAGGTGGTATGGTTTTAGAGAAGAATTTCAAGAGTTCTTGGCAAAAAGatAATATCGATCCTCCTTCGCCGTCAACCCATACTGACCACCAGTATCCTGTGACTAATATGACAGACGTTCCAAAAAGCTATTATGGTGACGTTTTGTCTCCATCAACTGATAAGGAAATCCAAGACAGTTGTTCGCAGTCAACTTTCGATTTCTTCCTTGAATCTCCatctgctgatgatgatgatgttgaaatGGTAATACCCGAGCTTTCATCGACTGAGAATAGCAATACTGGTATTACGAATGGCATACAAAGCCTGTCACAGGAGACTAGCATACCTCGATCTCTGTAGAAATAATGCTAGTAGCCCATCAATGTCTTTGTCTGTCAGTTCAAATAAAGATGACTTGGCTGCAAAGTCTTTGGCATGTGACAGCAGCGGCAGTGAAGAGTTTGAGCTCCAAATGATTTCTGGTGTCAAAAGTGGCAGCACATGTACATTAGAAGACAATCTCTTAGCTGGCTTGAAGTTCTCTCTGAAAAACAATGGCGAACAGACGGATTATATTACTTCGTCTCCCGAAACTATTCATGAATATATAGACGATGACTTGCCATGTTTTGATGTGTTCACAGTATAGTTGCTAATCGTTGTTGACTTTGTAAAGTCAATTTCGTTTTGTACGTAAAGATTTTTGTATTAAAAATACTTCTCCTTAAACGATTATGAGAGCTTTGTAATCACC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0VGT4	5'-3' DNA helicase ZGRF1 OS=Mus musculus OX=10090 GN=Zgrf1 PE=1 SV=2
Q86YA3	5'-3' DNA helicase ZGRF1 OS=Homo sapiens OX=9606 GN=ZGRF1 PE=1 SV=3
Q9HEH1	Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=2E4.130 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003029 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF06839 all species →	zf-GRF	GRF zinc finger	Domain	Interproscan
PF10382 all species →	DUF2439	Protein of unknown function (DUF2439)	Family	Interproscan
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR010666 all species →	Domain	Zinc finger, GRF-type	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR045055 all species →	Family	DNA2/NAM7-like helicase	Interproscan
IPR018838 all species →	Domain	5'-3' DNA helicase ZGRF1-like, N-terminal domain	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887 all species →	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14326	UPF1, RENT1; regulator of nonsense transcripts 1	EC:5.6.2.5 EC:5.6.2.3	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.