Gene detail

Detailed information of ENSOJPP00000032281.1 in Anthopleura xanthogrammica

Genomic Location: chr3:14554531...14569466
NR annotation: XP_031552938.1, dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Actinia tenebrosa]
Species Anthopleura xanthogrammica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSOJPT00000037496

GATTTATGTCACGTGTCCAGTTCTTTGTGCTTCCTCTCCCGACACGTCTCCCCTTCAACATGGCTGCACGAGGTGTGAGTCTGGTACTGCTTTTGGCCTTGTTTGGCTTAAGCCAGGGATTATCAGCGTCCTCAGTACTTAGCTTACAAGACCAAACCAAGTTACGGAAAATCTTCCAAGATGCTGCCCCCTTCACTGACTTAGAAACTGCTCATTATGCTGTCAAAGGACTAAAGTTCTTCAAGTCTGAAATACCAACCAATCAGGATTTGTGCAAGTTCGTCAAGGAAAAAGTTGATGTCAATGATATCAAGTCCATCTACCATGCATCATCTGTCAGCAAAACCCTTGGAAACTGCAATcTTGCATTGAATGATGCAGAGAAGAAGCTGAATGAAGCAATTGTTGAAGGTGCAGCAGCTAGTACAATCTTCTTTGCAGTGTCTTCCCTGAAGAATCTTGGAATGAAAGTTGACAGCAATGTTGTAATCAAAGCAATCCGTGCTGCGGCAAGCTCAGAAGAAGACAGTATCATGAGCTCAGTCCATTCTCTTAACACAGCCACCTTGTTGCCTAAAGGAACTGATGTGAACTTTATTGTCGACATGGTTGAGgaTGTTGTGGCCCAAGCTGATGAAATAGATAATACTTATTTACAGTTTGAAGGTGGTCTAGTTCCTACAGCAGAAGTGGTAACTGCTTCTTATAAGATTGGAGAATACTTAAAGAAGAAGCCATCAATCCAAGAGGAACAAGTCATCAAATTTGCCAACTACTTGTTGACCAGGAAACATGTCCAGTCAGTCAAAGACACCTTCTTCCTTTTAAAGGCCATTAATATTCTTTCTAACAATGATttCCATGTACCAGTGGTAGTGCAGCTCTATGGCACCCCTCTCATTTCTGCTGATAATAAAGTCTTTAAGGTTAGAGTGACCAACGTCATGGACAAGGCTTTGGGTAAAATGAGTGTAACAGCAGTATCAGCTGCTGACTCTGAAGGAACAACAGTCCTCAGCAACAAGGAATTCAAAGCTGGTGCCGATGATTATGATTTGGATTTCATGGCCTCCAAACCTAGCCCAGGTGTCTACACTGTGACAGTCAACGTCAAACCAGAGAAAGAAGACAAGCGCTTGATTGGCACTTCTGGTGCTCAGCTCAAGGTGAAAGTAGTAACCAAGGTTACCATGGGAAAAGTAGAATTATCTGTCATAGACAAAGAACAGTCCCACACAGTCAAGTCCTTGAGCACCAACTACCCAAGTAAGTTTGATAAGACCATCGAAGCTGACTTCCACCAGAAAATAGTCATGAAATTTGCCATCAAGAGTGGGACTGGACAGCTTCTCACCCCACACCAGGCCTTTGTGAGACTGACAAACCAAAAGACAAAGCAAGAGATTTTCTTTGTTCCTGAACCAGACTCAAGCAAAATGTACAAATTTGACCTGGATCTTGGTGCTACAGCTAAAGACTCCTTTGCCTACAGATctggaaaatatgaaatgGAACTTATTATTGGTGATGCAGTCATTCAGAACCCCTTTGAGTGGACAGCTGGTCTTCTTTCATTGACATTTGGAGAACAGCCACCAAAAGccaagaaagagaaacaaaCAATGTACTCAACCAAGCCACAAATAGATCATCAGTTCCGTGTACCAGAGAAGCGTCCTCCTCAGACTGTCTCCTCGGCATTCACTGTACTCATCTTTGTACCACTTCTCATCATGTTGGTCCTGtGGCTTAACATTGGGGCAAACATCTCTAACTTTGGATTCTCTCTCAGTACTATCGTGTTCCACGTTGGTCTAGGAGCTATTTTCGCATTGTATTACTACTTCTGGATTAAATTGGACATGTTCACTACCCTTAAAATGCTCACTGTGATCGGTGGAGTAACCTTCCTTGCTGCCAACAGTCTACTGAGTGGCATAGCTGCTCGCAGGGCCAAGCGTTAGACGTGTAGAGGAACTACAACAATAATACTACACAGTAGCTATGCAATTTTTATTACTTTGTTGTTCCATCacattaataaaataaaataaaattcttttacaTTGTTTATGTTGCAATATGTTTTGTTGAGTGATGTGGTGAGCGAGTGAATAAGTGTTTTAACACTactacataaaaaaatattgatattaatgtatttttttaaatataaggCAGTATCAAACGTCCGGATGCTGATCATTAACCATAGCTTTCGAGGAACTAATTAATTATTAGAACTATTTTACTAAAAccatattataattataataatgatttattcaaTAGGATCCACTAGGTGGCTCTTCGCCTATTGAAATATCATACAATTATAAGCTATTATATATAAAACAGGTCTACTAAAACTatgttacagtgcgaatcgaaaaacggTGGGCACCgcaaatatttcagaaatcgtgtatcgttcgttgaacaatctgaagcaattttcaaattcaaatataaaaagtattaaataaagagagagaaaaacctATAATAACTAAAACTACACTACTGAGTTTCAAAGTTCATGCAACAGTTGCTTTGAAAGTGCGTGCTATGTTAAGCGAGTATGAGATCGTggctttattattattattataaaactcatgaataattaatgaggaaaacacaatagaaatcattgtccgtggaggaggttgtatatctgatacaaaatcgtcctgatttgcataaactttaactccaattttctcagccaaattcaattttgtctttaaaattttagtagaacatgaatgtatacacctagacggttcataagtaatatacaatatgagtgtccgtgttgtatatattgcttattattattattatattattattattattattattatcattattattacactttGTATTGCATCAGTCTTCCAAAGTCAAATCCAGAACATCAACTTTTCTACGTTTCCTTGGTCCATGCATAGTCTGGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1PCT7	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Canis lupus familiaris OX=9615 GN=RPN2 PE=1 SV=3
Q3SZI6	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Bos taurus OX=9913 GN=RPN2 PE=2 SV=1
Q5RBM1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Pongo abelii OX=9601 GN=RPN2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005039 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05817 all species →	Ribophorin_II	Oligosaccharyltransferase subunit Ribophorin II	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008814 all species →	Family	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12640 all species →	RIBOPHORIN II	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0008250 all species →	Cellular Component	oligosaccharyltransferase complex	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12667	RPN2, SWP1; dolichyl-diphosphooligosaccharide---protein glycosyltransferase subunit 2 (ribophorin II)	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.